Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007908

Physical Location & Seq

Genomic Coordinates Forward (+)

5813824 .. 5815117

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1056300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCTGGAGTGGTGGCCTCGGCTGAGGAGGCAGAAGATACGGCGGCGCCGCTATCATCTCCGAACAGCACGGTTTCATCGTTTCAGATGGATTTTGGAATGAGAAGTGGAGGAAGATCGAGTAAAAGAGATTTGGAGGTCGATGCCGACAGAGCGAGTGATGACGAGGAGAACGGGTCGACTCGGAAGAAACTCAGGCTCTCTAAAGATCAATCGGCTTTTCTTGAGGAGAGCTTCAAAGAGCACAGCACTCTCAACTCAATCCTAGAGTATACAATTCTCCTACTTTTGACTAATTTGTTCTTGAATCTTCGTCCTCGCCAAGTGGAAGTGTGGTTTCAGAATCGAAGAGCAAGGACCAAGCTGAAGCAGACAGAAGTAGATTGCGAGTACTTAAAGAGACGCTGTGAAACACTGACAGAAGAGAATAGGAGGTTACAAAAAGAACTGCAAGAATTAAGAGCTTTGAAGACCTCTCAGCCTTTCTACATGCAGCTGCCTGCCACCACACTCACCATGTGCCCCTCATGTGAGCGCGTGGTCACAACTGCCTCAGCCAACACCTCCACCACCACCACCACCAACAACAACCACATAAAGTCTGCTCAGAACAAGCAGCCAAGGTTAAATCCATTTGCTGCTCAGGTCCACATGCAGCAGTGTCAAGGTGCAGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

227

Amino Acids

25.5

Weight (kDa)

8.27

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	62 - 121	6.8e-08	Homeodomain
HALZ	PF02183	123 - 157	3.3e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06710 AT5G06710 AT5G06710 AT5G06710
fragaria_vesca	FvH4_6g22050
malus_domestica	MD01G1069700.v1.1 MD12G1055800.v1.1 MD14G1056200.v1.1 MD14G1056300.v1.1
prunus_persica	Prupe.7G079300_v2.0.a1 Prupe.7G079300_v2.0.a1
pyrus_communis	pycom12g04870 pycom14g04600
rosa_chinensis	RchiOBHm_Chr3g0479361
rosa_laevigata	RLG00000023581
rosa_multiflora	Rmu_sc0006763.1_g000001 Rmu_sc0033237.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402380
rosa_rugosa	Rorug03G0174600
rosa_samantha	Rh3AG225900 Rh3BG258600 Rh3CG254200 Rh3DG250000
rosa_wichuraiana	Rw3G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AccI	GTMKAC	2 cut(s)	179, 272
AccII	CGCG	1 cut(s)	537
AciI	CCGC	2 cut(s)	44, 50
AcuI	CTGAAG	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	519
AfaI	GTAC	1 cut(s)	392
AgsI	TTSAA	3 cut(s)	238, 307, 469
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	5 cut(s)	234, 364, 464, 496, 674
AluI	AGCT	5 cut(s)	234, 364, 464, 496, 674
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	394
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	7 cut(s)	493, 496, 616, 638, 655, 671, 674
AspLEI	GCGC	2 cut(s)	49, 537
AspS9I	GGNCC	2 cut(s)	357, 646
AsuHPI	GGTGA	1 cut(s)	505
AvaII	GGWCC	2 cut(s)	357, 646
BaeGI	GKGCMC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	246
BbvCI	CCTCAGC	2 cut(s)	24, 553
BbvI	GCAGC	6 cut(s)	483, 505, 625, 628, 661, 667
BccI	CCATC	1 cut(s)	82
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	50
BisI	GCNGC	9 cut(s)	45, 50, 494, 497, 617, 639, 656, 672, 675
BlsI	GCNGC	9 cut(s)	46, 51, 495, 498, 618, 640, 657, 673, 676
BmcAI	AGTACT	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	2 cut(s)	357, 646
BmgT120I	GGNCC	2 cut(s)	357, 646
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	3 cut(s)	24, 553, 642
BpuEI	CTTGAG	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	18, 620
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	18, 620
BseMII	CTCAG	6 cut(s)	15, 208, 491, 567, 620, 656
BseRI	GAGGAG	3 cut(s)	41, 182, 242
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	6 cut(s)	483, 505, 625, 628, 661, 667
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	394
BsmBI	CGTCTC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	246, 524
Bsp143I	GATC	2 cut(s)	116, 208
BspACI	CCGC	2 cut(s)	44, 50
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	6 cut(s)	16, 207, 490, 566, 619, 655
BspFNI	CGCG	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	48
BspQI	GCTCTTC	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	18, 620
BssMI	GATC	2 cut(s)	116, 208
BssNAI	GTATAC	1 cut(s)	273
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	620
Bst1107I	GTATAC	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	343, 417
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	6 cut(s)	24, 194, 477, 553, 606, 642
BstFNI	CGCG	1 cut(s)	537
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	2 cut(s)	49, 537
BstKTI	GATC	2 cut(s)	119, 211
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	2 cut(s)	116, 208
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 152
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	2 cut(s)	493, 655
BstSCI	CCNGG	1 cut(s)	4
BstSLI	GKGCMC	1 cut(s)	524
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	6 cut(s)	483, 505, 625, 628, 661, 667
BstV2I	GAAGAC	1 cut(s)	476
BstZ17I	GTATAC	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	17
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	2 cut(s)	413, 665
Cac8I	GCNNGC	1 cut(s)	501
CfoI	GCGC	2 cut(s)	49, 537
Cfr13I	GGNCC	2 cut(s)	357, 646
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	5 cut(s)	490, 517, 528, 652, 678
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	6 cut(s)	24, 194, 477, 553, 606, 642
DinI	GGCGCC	1 cut(s)	48
DpnI	GATC	2 cut(s)	118, 210
DpnII	GATC	2 cut(s)	116, 208
DraIII	CACNNNGTG	1 cut(s)	519
Eam1104I	CTCTTC	2 cut(s)	343, 417
EarI	CTCTTC	2 cut(s)	343, 417
Eco130I	CCWWGG	1 cut(s)	620
Eco47I	GGWCC	2 cut(s)	357, 646
Eco57I	CTGAAG	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	620
EgeI	GGCGCC	1 cut(s)	48
EheI	GGCGCC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	620
Esp3I	CGTCTC	1 cut(s)	394
FaeI	CATG	5 cut(s)	493, 520, 531, 655, 681
FaiI	YATR	7 cut(s)	273, 491, 518, 529, 596, 653, 679
FatI	CATG	5 cut(s)	489, 516, 527, 651, 677
FblI	GTMKAC	2 cut(s)	179, 272
Fnu4HI	GCNGC	9 cut(s)	45, 50, 494, 497, 617, 639, 656, 672, 675
Fsp4HI	GCNGC	9 cut(s)	45, 50, 494, 497, 617, 639, 656, 672, 675
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	2 cut(s)	48, 536
GluI	GCNGC	9 cut(s)	45, 50, 494, 497, 617, 639, 656, 672, 675
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	17
HgaI	GACGC	1 cut(s)	411
HhaI	GCGC	2 cut(s)	49, 537
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	5 cut(s)	493, 520, 531, 655, 681
Hin6I	GCGC	2 cut(s)	47, 535
HinP1I	GCGC	2 cut(s)	47, 535
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	3 cut(s)	181, 307, 343
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	3 cut(s)	180, 273, 649
Hpy188I	TCNGA	5 cut(s)	63, 87, 186, 342, 609
Hpy188III	TCNNGA	2 cut(s)	224, 304
Hpy8I	GTNNAC	3 cut(s)	180, 273, 649
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	5 cut(s)	451, 493, 655, 671, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 152
HpyF3I	CTNAG	6 cut(s)	24, 194, 477, 553, 606, 642
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	5 cut(s)	493, 520, 531, 655, 681
HspAI	GCGC	2 cut(s)	47, 535
KasI	GGCGCC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	116, 208
LguI	GCTCTTC	1 cut(s)	343
LpnPI	CCDG	4 cut(s)	18, 181, 513, 629
Lsp1109I	GCAGC	6 cut(s)	483, 505, 625, 628, 661, 667
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	2 cut(s)	435, 541
MalI	GATC	2 cut(s)	118, 210
MboI	GATC	2 cut(s)	116, 208
MboII	GAAGA	7 cut(s)	47, 126, 199, 302, 360, 434, 481
MhlI	GDGCHC	2 cut(s)	246, 524
MluCI	AATT	3 cut(s)	276, 295, 455
Mly113I	GGCGCC	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	175
MseI	TTAA	3 cut(s)	395, 458, 626
MspA1I	CMGCKG	2 cut(s)	496, 674
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	29, 152
NarI	GGCGCC	1 cut(s)	47
NdeII	GATC	2 cut(s)	116, 208
NlaIII	CATG	5 cut(s)	493, 520, 531, 655, 681
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	541
NspI	RCATGY	2 cut(s)	493, 655
PciSI	GCTCTTC	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	307, 343
PkrI	GCNGC	9 cut(s)	46, 51, 495, 498, 618, 640, 657, 673, 676
PleI	GAGTC	1 cut(s)	175
PluTI	GGCGCC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	2 cut(s)	357, 646
PvuII	CAGCTG	2 cut(s)	496, 674
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SalI	GTCGAC	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	3 cut(s)	395, 458, 626
SatI	GCNGC	9 cut(s)	45, 50, 494, 497, 617, 639, 656, 672, 675
Sau3AI	GATC	2 cut(s)	116, 208
Sau96I	GGNCC	2 cut(s)	357, 646
ScaI	AGTACT	1 cut(s)	392
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	2 cut(s)	246, 524
SfaNI	GCATC	1 cut(s)	133
SfoI	GGCGCC	1 cut(s)	48
SinI	GGWCC	2 cut(s)	357, 646
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	276, 295, 455
SsiI	CCGC	2 cut(s)	44, 50
SspDI	GGCGCC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	4 cut(s)	119, 141, 179, 346
TasI	AATT	3 cut(s)	276, 295, 455
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	2 cut(s)	47, 52
TfiI	GAWTC	2 cut(s)	307, 343
Tru1I	TTAA	3 cut(s)	395, 458, 626
Tru9I	TTAA	3 cut(s)	395, 458, 626
TscAI	CASTG	2 cut(s)	420, 665
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	7 cut(s)	493, 496, 616, 638, 655, 671, 674
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	420, 665
VpaK11BI	GGWCC	2 cut(s)	357, 646
XceI	RCATGY	2 cut(s)	493, 655
XmiI	GTMKAC	2 cut(s)	179, 272
XspI	CTAG	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.