Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007908

Physical Location & Seq

Genomic Coordinates Forward (+)

5791661 .. 5794050

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1056200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAGTTAGCTCTGAGCTTGGGGGATGCTTCAAAGCCTTTTCTGTTCCTTGACAAAGCTCCAAAGATTGGTAGCAACAAGGATCTAGGGTTTTGCATGGGCTTGGGGAGTGCTGCAAGATCGGATGAGAGTAGCAGAGAGAGCACCCATGAAGTTTATGATCAAGAGGAAGGAAGAAGAAGTAGGGTTTCATCAGATCCACCTCTTCAGCTTAATCTCTTACCTTCTGCTCCAGTTCCTCGTAGCCGTGCTTCTTCTCAGCTTAGCTTCCCATGGCTTACTGATAATCTGGCTGTGTCTGAACCGGCCGGTTCATCAGATGGAACGGGAATAGGGTTCGATGTGAACCGGATGCCTGGAGTGGTGGCCTCGGCTGAAGAGGCAGAAGATACGGCGGCGCCGCTATCATCTCCGAACAGCACGGTTTCATCGTTTCAGATGGATTTTGGAATGAGAAGTGGAGGAAGATCGAGTAAAAGAGATATGGAGGTCGATGCAGACAGAGCGAGCGATGACGAGGAGAACGGGTCGACTCGGAAGAAACTCAGGCTCTCTAAAGATCAATCGGCTTTTCTTGAGGAGAGCTTCAAAGAGCACAGCACTCTCAATCCTAAGCAAAAACTTGCTCTTGCTAAACAGTTGAATCTTCGTCCTCGCCAAGTGGAAGTGTGGTTTCAGAATCGAAGAGCAAGGACCAAGCTGAAGCAGACCGAAGTAGATTGCGAGTACTTAAAGAGATGCTGTGAAACACTGACAGAAGAGAATAGGAGGTTACAAAAAGAACTGCAAGAATTAAGAGCTTTGAAGACCTCTCAGCCTTTCTACATGCAGCTGCCTGCCACCACACTCACCATGTGCCCCTCATGTGAGCGCGTGGTCACAACTGCCTCCACCACCACCACCACCCCCACCACCACCACCACCACCACCAACAACCACATAAAGTCTGCTCAGAACAAGCAGCCAAGGTTAAATCCATTTGCTGCTCAGGTCCACATGCAGCAGCAGCATCAAGGTGCAGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

343

Amino Acids

37.78

Weight (kDa)

7.62

Isoelectric Point (pI)

63.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD-ZIP_N	PF04618	27 - 145	8.2e-07	HD-ZIP protein N terminus
Homeodomain	PF00046	179 - 233	3.2e-15	Homeodomain
HALZ	PF02183	235 - 269	8.8e-11	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06710 AT5G06710 AT5G06710 AT5G06710
fragaria_vesca	FvH4_6g22050
malus_domestica	MD01G1069700.v1.1 MD12G1055800.v1.1 MD14G1056200.v1.1 MD14G1056300.v1.1
prunus_persica	Prupe.7G079300_v2.0.a1 Prupe.7G079300_v2.0.a1
pyrus_communis	pycom12g04870 pycom14g04600
rosa_chinensis	RchiOBHm_Chr3g0479361
rosa_laevigata	RLG00000023581
rosa_multiflora	Rmu_sc0006763.1_g000001 Rmu_sc0033237.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402380
rosa_rugosa	Rorug03G0174600
rosa_samantha	Rh3AG225900 Rh3BG258600 Rh3CG254200 Rh3DG250000
rosa_wichuraiana	Rw3G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	397
AccB7I	CCANNNNNTGG	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	530
AccII	CGCG	1 cut(s)	873
AciI	CCGC	2 cut(s)	395, 401
AclWI	GGATC	2 cut(s)	90, 191
AcoI	YGGCCR	1 cut(s)	306
AcuI	CTGAAG	3 cut(s)	191, 396, 722
AcyI	GRCGYC	1 cut(s)	398
AdeI	CACNNNGTG	1 cut(s)	855
AfaI	GTAC	1 cut(s)	728
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	4 cut(s)	33, 589, 643, 805
AjnI	CCWGG	1 cut(s)	355
Alw21I	GWGCWC	2 cut(s)	146, 597
AlwI	GGATC	2 cut(s)	90, 191
AoxI	GGCC	2 cut(s)	306, 366
AspLEI	GCGC	2 cut(s)	400, 873
AspS9I	GGNCC	2 cut(s)	693, 991
AsuHPI	GGTGA	1 cut(s)	841
AvaII	GGWCC	2 cut(s)	693, 991
BaeGI	GKGCMC	1 cut(s)	860
BanI	GGYRCC	1 cut(s)	397
BarI	GAAGNNNNNNTAC	2 cut(s)	235, 267
BbsI	GAAGAC	1 cut(s)	812
Bbv12I	GWGCWC	2 cut(s)	146, 597
BbvI	GCAGC	9 cut(s)	100, 819, 841, 970, 973, 1009, 1012, 1015, 1018
BccI	CCATC	2 cut(s)	314, 433
BceAI	ACGGC	2 cut(s)	231, 408
BciT130I	CCWGG	1 cut(s)	357
BclI	TGATCA	1 cut(s)	160
BfaI	CTAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	401
BlpI	GCTNAGC	1 cut(s)	263
BmcAI	AGTACT	1 cut(s)	728
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	2 cut(s)	693, 991
BmgT120I	GGNCC	2 cut(s)	693, 991
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	5 cut(s)	16, 342, 484, 728, 1018
BpiI	GAAGAC	1 cut(s)	812
BpmI	CTGGAG	2 cut(s)	216, 378
Bpu10I	CCTNAGC	2 cut(s)	612, 987
Bpu1102I	GCTNAGC	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	596
BsaHI	GRCGYC	1 cut(s)	398
BsaJI	CCNNGG	3 cut(s)	272, 369, 965
BsaWI	WCCGGW	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse118I	RCCGGY	2 cut(s)	304, 308
Bse1I	ACTGG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	272, 369, 965
BseGI	GGATG	3 cut(s)	31, 130, 357
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	6 cut(s)	5, 272, 559, 827, 965, 1001
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	2 cut(s)	533, 593
BseSI	GKGCMC	1 cut(s)	860
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	9 cut(s)	100, 819, 841, 970, 973, 1009, 1012, 1015, 1018
Bsh1236I	CGCG	1 cut(s)	873
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	308, 368
BshNI	GGYRCC	1 cut(s)	397
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	146, 597
BsiSI	CCGG	3 cut(s)	305, 309, 349
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	2 cut(s)	308, 368
Bsp1286I	GDGCHC	3 cut(s)	146, 597, 860
Bsp143I	GATC	6 cut(s)	82, 119, 160, 196, 467, 559
Bsp1720I	GCTNAGC	1 cut(s)	263
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	2 cut(s)	395, 401
BspANI	GGCC	2 cut(s)	308, 368
BspCNI	CTCAG	6 cut(s)	6, 271, 558, 826, 964, 1000
BspFNI	CGCG	1 cut(s)	873
BspLI	GGNNCC	1 cut(s)	399
BspPI	GGATC	2 cut(s)	90, 191
BspQI	GCTCTTC	1 cut(s)	679
BspT107I	GGYRCC	1 cut(s)	397
BsrFI	RCCGGY	2 cut(s)	304, 308
BsrI	ACTGG	1 cut(s)	233
BssAI	RCCGGY	2 cut(s)	304, 308
BssECI	CCNNGG	3 cut(s)	272, 369, 965
BssMI	GATC	6 cut(s)	82, 119, 160, 196, 467, 559
BssNI	GRCGYC	1 cut(s)	398
BssT1I	CCWWGG	2 cut(s)	272, 965
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	424, 639
Bst6I	CTCTTC	4 cut(s)	210, 372, 679, 753
BstACI	GRCGYC	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	508, 837
BstDEI	CTNAG	8 cut(s)	14, 258, 263, 545, 612, 813, 951, 987
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	3 cut(s)	31, 130, 357
BstFNI	CGCG	1 cut(s)	873
BstH2I	RGCGCY	1 cut(s)	401
BstHHI	GCGC	2 cut(s)	400, 873
BstKTI	GATC	6 cut(s)	85, 122, 163, 199, 470, 562
BstMBI	GATC	6 cut(s)	82, 119, 160, 196, 467, 559
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 380, 503, 1006
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	2 cut(s)	829, 1000
BstSCI	CCNGG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	860
BstUI	CGCG	1 cut(s)	873
BstV1I	GCAGC	9 cut(s)	100, 819, 841, 970, 973, 1009, 1012, 1015, 1018
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	2 cut(s)	82, 196
BstYI	RGATCY	2 cut(s)	82, 196
BstZI	CGGCCG	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	308, 368
BtgI	CCRYGG	1 cut(s)	272
BtgZI	GCGATG	1 cut(s)	525
BtsCI	GGATG	3 cut(s)	31, 130, 357
BtsIMutI	CAGTG	1 cut(s)	749
Cac8I	GCNNGC	2 cut(s)	508, 837
CfoI	GCGC	2 cut(s)	400, 873
Cfr10I	RCCGGY	2 cut(s)	304, 308
Cfr13I	GGNCC	2 cut(s)	693, 991
Csp6I	GTAC	1 cut(s)	727
CviAII	CATG	8 cut(s)	97, 149, 273, 826, 853, 864, 997, 1026
CviQI	GTAC	1 cut(s)	727
DdeI	CTNAG	8 cut(s)	14, 258, 263, 545, 612, 813, 951, 987
DinI	GGCGCC	1 cut(s)	399
DpnI	GATC	6 cut(s)	84, 121, 162, 198, 469, 561
DpnII	GATC	6 cut(s)	82, 119, 160, 196, 467, 559
DraIII	CACNNNGTG	1 cut(s)	855
EaeI	YGGCCR	1 cut(s)	306
EagI	CGGCCG	1 cut(s)	306
Eam1104I	CTCTTC	4 cut(s)	210, 372, 679, 753
EarI	CTCTTC	4 cut(s)	210, 372, 679, 753
EclXI	CGGCCG	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	272, 965
Eco47I	GGWCC	2 cut(s)	693, 991
Eco52I	CGGCCG	1 cut(s)	306
Eco57I	CTGAAG	3 cut(s)	191, 396, 722
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	272, 965
EgeI	GGCGCC	1 cut(s)	399
EheI	GGCGCC	1 cut(s)	399
ErhI	CCWWGG	2 cut(s)	272, 965
FaeI	CATG	8 cut(s)	100, 152, 276, 829, 856, 867, 1000, 1029
FatI	CATG	8 cut(s)	96, 148, 272, 825, 852, 863, 996, 1025
FbaI	TGATCA	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	530
FokI	GGATG	3 cut(s)	38, 137, 364
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	2 cut(s)	399, 872
GsuI	CTGGAG	2 cut(s)	216, 378
HaeII	RGCGCY	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	308, 368
HapII	CCGG	3 cut(s)	305, 309, 349
HhaI	GCGC	2 cut(s)	400, 873
Hin1I	GRCGYC	1 cut(s)	398
Hin1II	CATG	8 cut(s)	100, 152, 276, 829, 856, 867, 1000, 1029
Hin6I	GCGC	2 cut(s)	398, 871
HinP1I	GCGC	2 cut(s)	398, 871
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HinfI	GANTC	3 cut(s)	532, 643, 679
HpaII	CCGG	3 cut(s)	305, 309, 349
HphI	GGTGA	1 cut(s)	841
Hpy166II	GTNNAC	3 cut(s)	346, 531, 994
Hpy188III	TCNNGA	2 cut(s)	164, 575
Hpy8I	GTNNAC	3 cut(s)	346, 531, 994
HpyAV	CCTTC	2 cut(s)	164, 234
HpyCH4III	ACNGT	2 cut(s)	424, 639
HpyCH4V	TGCA	8 cut(s)	96, 116, 497, 787, 829, 1000, 1019, 1025
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 380, 503, 1006
HpyF3I	CTNAG	8 cut(s)	14, 258, 263, 545, 612, 813, 951, 987
Hsp92I	GRCGYC	1 cut(s)	398
Hsp92II	CATG	8 cut(s)	100, 152, 276, 829, 856, 867, 1000, 1029
HspAI	GCGC	2 cut(s)	398, 871
KasI	GGCGCC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	6 cut(s)	82, 119, 160, 196, 467, 559
LguI	GCTCTTC	1 cut(s)	679
LmnI	GCTCC	2 cut(s)	64, 235
Lsp1109I	GCAGC	9 cut(s)	100, 819, 841, 970, 973, 1009, 1012, 1015, 1018
LweI	GCATC	5 cut(s)	16, 342, 484, 728, 1018
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	771, 877
MalI	GATC	6 cut(s)	84, 121, 162, 198, 469, 561
MboI	GATC	6 cut(s)	82, 119, 160, 196, 467, 559
MflI	RGATCY	2 cut(s)	82, 196
MhlI	GDGCHC	3 cut(s)	146, 597, 860
MluCI	AATT	1 cut(s)	791
Mly113I	GGCGCC	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	526
MseI	TTAA	4 cut(s)	213, 731, 794, 971
MslI	CAYNNNNRTG	1 cut(s)	1014
MspA1I	CMGCKG	2 cut(s)	832, 1022
MspI	CCGG	3 cut(s)	305, 309, 349
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	873
MwoI	GCNNNNNNNGC	4 cut(s)	141, 380, 503, 1006
NarI	GGCGCC	1 cut(s)	398
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	6 cut(s)	82, 119, 160, 196, 467, 559
NlaIII	CATG	8 cut(s)	100, 152, 276, 829, 856, 867, 1000, 1029
NlaIV	GGNNCC	1 cut(s)	399
NmeAIII	GCCGAG	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	877
NspI	RCATGY	2 cut(s)	829, 1000
PciSI	GCTCTTC	1 cut(s)	679
PcsI	WCGNNNNNNNCGW	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	643, 679
PflMI	CCANNNNNTGG	1 cut(s)	68
PleI	GAGTC	1 cut(s)	526
PluTI	GGCGCC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	2 cut(s)	693, 991
PsuI	RGATCY	2 cut(s)	82, 196
PvuII	CAGCTG	2 cut(s)	832, 1022
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
RseI	CAYNNNNRTG	1 cut(s)	1014
SalI	GTCGAC	1 cut(s)	529
SapI	GCTCTTC	1 cut(s)	679
SaqAI	TTAA	4 cut(s)	213, 731, 794, 971
Sau3AI	GATC	6 cut(s)	82, 119, 160, 196, 467, 559
Sau96I	GGNCC	2 cut(s)	693, 991
ScaI	AGTACT	1 cut(s)	728
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	3 cut(s)	146, 597, 860
SfaNI	GCATC	5 cut(s)	16, 342, 484, 728, 1018
SfoI	GGCGCC	1 cut(s)	399
SinI	GGWCC	2 cut(s)	693, 991
SmiMI	CAYNNNNRTG	1 cut(s)	1014
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	1 cut(s)	791
SsiI	CCGC	2 cut(s)	395, 401
SspDI	GGCGCC	1 cut(s)	397
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	2 cut(s)	272, 965
TaaI	ACNGT	2 cut(s)	424, 639
TaqI	TCGA	5 cut(s)	339, 470, 492, 530, 682
TaqII	GACCGA	1 cut(s)	725
TasI	AATT	1 cut(s)	791
TatI	WGTACW	1 cut(s)	726
TauI	GCSGC	2 cut(s)	398, 403
TfiI	GAWTC	2 cut(s)	643, 679
Tru1I	TTAA	4 cut(s)	213, 731, 794, 971
Tru9I	TTAA	4 cut(s)	213, 731, 794, 971
TscAI	CASTG	1 cut(s)	756
TseFI	GTSAC	1 cut(s)	877
Tsp45I	GTSAC	1 cut(s)	877
TspDTI	ATGAA	4 cut(s)	165, 180, 303, 417
TspRI	CASTG	1 cut(s)	756
Van91I	CCANNNNNTGG	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	693, 991
XceI	RCATGY	2 cut(s)	829, 1000
XmiI	GTMKAC	1 cut(s)	530
XspI	CTAG	1 cut(s)	86
ZrmI	AGTACT	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.