AT5G06990

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015467
Physical Location & Seq
Forward (+)
2169425 .. 2170606
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06990.1

Sequence Viewer

Length: 786 bp
ATGGCAACACCACCGTTAACGCCAAGAATGATGACTCCAACAACAATGTCGCCTCTCGGGAGTCCAAAGTCGAAGAAGTCAACGGCGACGGTACGACCGGAGATCACGTTGGAGCAACCATCTGGAAGAAACAAAACAACCGGCTCCAAATCGACGAAACTCTTCCGACGTGTTAGGTCTGTGTTCAGATCACTTCCGATCATGTCTCCGATGTGTAAATTTCCCGTAGGAGGAGGAGGAAGACTCCACGAGAATCACGTTCATGGAGGAACACGTGTCACGGGAACGTTGTTTGGTTACCGCAAAACGCGTGTGAATCTAGCGGTTCAAGAGAATCCGCGTTCTTTACCGATTCTTTTATTGGAGTTAGCGATTCCAACGGGGAAACTTCTTCAAGATCTTGGAGTCGGTTTAGTGAGAATCGCGTTGGAATGCGAGAAGAAACCGAGCGAGAAAACCAAAATCATTGACGAACCGATTTGGGCGTTGTATTGTAACGGTAAGAAATCTGGTTATGGTGTGAAGAGACAACCAACGGAAGAGGATCTTGTGGTGATGCAGATGCTTCATGCTGTGTCGATGGGAGCTGGTGTTTTACCGGTGAGCAGTGGCGCGATCACGGAGCAAAGCGGCGGAGGAGGAGGAGGACAACAAGAAGGAGATTTGACGTATATGAGAGCACATTTCGAGAGAGTGATTGGGTCAAGAGACTCCGAGACGTATTACATGATGAATCCTGATGGGAACAGTGGACCTGAGCTTAGTATCTTTTTCGTGAGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

261

Amino Acids

28.39

Weight (kDa)

9.78

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 93 - 260 1e-68 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015467)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06990
fragaria_vesca FvH4_7g03890
malus_domestica MD07G1043800.v1.1
prunus_persica Prupe.2G043700_v2.0.a1
pyrus_communis pycom02g23680 pycom07g03140
rosa_chinensis RchiOBHm_Chr1g0327341
rosa_laevigata RLG00000029997
rosa_multiflora Rmu_sc0003600.1_g000036
rosa_roxburghii Rroxscaffold_4G00322730
rosa_rugosa Rorug01G0066800
rosa_samantha Rh1AG083500 Rh1BG066400 Rh1CG081400 Rh1DG087800
rosa_wichuraiana Rw1G006560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 310, 340, 425, 614
AciI CCGC 5 cut(s) 301, 323, 338, 630, 633
AclI AACGTT 1 cut(s) 287
AclWI GGATC 1 cut(s) 552
AcsI RAATTY 1 cut(s) 218
AcvI CACGTG 1 cut(s) 275
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 230
AflIII ACRYGT 4 cut(s) 169, 272, 274, 308
AgeI ACCGGT 1 cut(s) 598
AgsI TTSAA 2 cut(s) 329, 395
AjiI CACGTC 1 cut(s) 170
AluBI AGCT 2 cut(s) 587, 760
AluI AGCT 2 cut(s) 587, 760
Alw21I GWGCWC 1 cut(s) 682
Alw26I GTCTC 4 cut(s) 210, 520, 702, 710
AlwI GGATC 1 cut(s) 552
Ama87I CYCGRG 1 cut(s) 56
ApoI RAATTY 1 cut(s) 218
AsiGI ACCGGT 1 cut(s) 598
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 614
AspS9I GGNCC 1 cut(s) 752
AsuHPI GGTGA 2 cut(s) 565, 613
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 752
BauI CACGAG 1 cut(s) 248
BbrPI CACGTG 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 682
BccI CCATC 3 cut(s) 127, 574, 734
BceAI ACGGC 1 cut(s) 99
BcoDI GTCTC 4 cut(s) 210, 520, 702, 710
BfaI CTAG 1 cut(s) 320
BglII AGATCT 1 cut(s) 397
BisI GCNGC 1 cut(s) 631
BlsI GCNGC 1 cut(s) 632
Bme18I GGWCC 1 cut(s) 752
BmeT110I CYCGRG 1 cut(s) 56
BmgBI CACGTC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 752
BmiI GGNNCC 1 cut(s) 145
BmsI GCATC 2 cut(s) 546, 552
BpiI GAAGAC 1 cut(s) 247
BplI GAGNNNNNCTC 2 cut(s) 228, 260
Bpu10I CCTNAGC 1 cut(s) 756
BsaAI YACGTR 1 cut(s) 275
BsaWI WCCGGW 2 cut(s) 97, 598
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 576, 606
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse118I RCCGGY 2 cut(s) 140, 598
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 747
BseRI GAGGAG 5 cut(s) 246, 249, 651, 654, 657
Bsh1236I CGCG 4 cut(s) 310, 340, 425, 614
Bsh1285I CGRYCG 1 cut(s) 98
BshTI ACCGGT 1 cut(s) 598
BsiEI CGRYCG 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 682
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 3 cut(s) 98, 141, 599
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 4 cut(s) 210, 520, 702, 710
BsmBI CGTCTC 1 cut(s) 710
BsmI GAATGC 1 cut(s) 437
BsoBI CYCGRG 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 682
Bsp143I GATC 6 cut(s) 102, 188, 198, 397, 544, 615
BspACI CCGC 5 cut(s) 301, 323, 338, 630, 633
BspCNI CTCAG 1 cut(s) 748
BspFNI CGCG 4 cut(s) 310, 340, 425, 614
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 1 cut(s) 552
BsrFI RCCGGY 2 cut(s) 140, 598
BssAI RCCGGY 2 cut(s) 140, 598
BssMI GATC 6 cut(s) 102, 188, 198, 397, 544, 615
BssSI CACGAG 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 248
Bst4CI ACNGT 4 cut(s) 15, 91, 500, 749
Bst6I CTCTTC 3 cut(s) 167, 518, 534
BstBAI YACGTR 1 cut(s) 275
BstDEI CTNAG 2 cut(s) 756, 761
BstEII GGTNACC 1 cut(s) 296
BstFNI CGCG 4 cut(s) 310, 340, 425, 614
BstHHI GCGC 1 cut(s) 614
BstKTI GATC 6 cut(s) 105, 191, 201, 400, 547, 618
BstMAI GTCTC 4 cut(s) 210, 520, 702, 710
BstMBI GATC 6 cut(s) 102, 188, 198, 397, 544, 615
BstMCI CGRYCG 1 cut(s) 98
BstPI GGTNACC 1 cut(s) 296
BstUI CGCG 4 cut(s) 310, 340, 425, 614
BstV2I GAAGAC 1 cut(s) 247
BstX2I RGATCY 2 cut(s) 397, 544
BstYI RGATCY 2 cut(s) 397, 544
BtrI CACGTC 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 2 cut(s) 613, 754
CfoI GCGC 1 cut(s) 614
Cfr10I RCCGGY 2 cut(s) 140, 598
Cfr13I GGNCC 1 cut(s) 752
Csp6I GTAC 1 cut(s) 92
CspAI ACCGGT 1 cut(s) 598
CviAII CATG 4 cut(s) 202, 263, 569, 727
CviJI RGCY 3 cut(s) 144, 587, 760
CviKI_1 RGCY 3 cut(s) 144, 587, 760
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 2 cut(s) 756, 761
DpnI GATC 6 cut(s) 104, 190, 200, 399, 546, 617
DpnII GATC 6 cut(s) 102, 188, 198, 397, 544, 615
Eam1104I CTCTTC 3 cut(s) 167, 518, 534
EarI CTCTTC 3 cut(s) 167, 518, 534
EciI GGCGGA 1 cut(s) 648
Eco47I GGWCC 1 cut(s) 752
Eco72I CACGTG 1 cut(s) 275
Eco88I CYCGRG 1 cut(s) 56
Eco91I GGTNACC 1 cut(s) 296
EcoO65I GGTNACC 1 cut(s) 296
Esp3I CGTCTC 1 cut(s) 710
FaeI CATG 4 cut(s) 205, 266, 572, 730
FaiI YATR 7 cut(s) 203, 264, 516, 570, 672, 674, 728
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FatI CATG 4 cut(s) 201, 262, 568, 726
Fnu4HI GCNGC 1 cut(s) 631
Fsp4HI GCNGC 1 cut(s) 631
FspBI CTAG 1 cut(s) 320
GlaI GCGC 1 cut(s) 613
GluI GCNGC 1 cut(s) 631
HapII CCGG 3 cut(s) 98, 141, 599
HhaI GCGC 1 cut(s) 614
Hin1II CATG 4 cut(s) 205, 266, 572, 730
Hin6I GCGC 1 cut(s) 612
HinP1I GCGC 1 cut(s) 612
HincII GTYRAC 2 cut(s) 18, 81
HindII GTYRAC 2 cut(s) 18, 81
HpaI GTTAAC 1 cut(s) 18
HpaII CCGG 3 cut(s) 98, 141, 599
HphI GGTGA 2 cut(s) 565, 613
Hpy166II GTNNAC 3 cut(s) 18, 81, 752
Hpy188I TCNGA 5 cut(s) 167, 188, 198, 210, 715
Hpy188III TCNNGA 8 cut(s) 58, 123, 329, 395, 688, 705, 737, 775
Hpy8I GTNNAC 3 cut(s) 18, 81, 752
Hpy99I CGWCG 3 cut(s) 91, 157, 171
HpyAV CCTTC 1 cut(s) 650
HpyCH4III ACNGT 4 cut(s) 15, 91, 500, 749
HpyCH4IV ACGT 7 cut(s) 107, 169, 258, 274, 287, 668, 719
HpyCH4V TGCA 1 cut(s) 559
HpyF3I CTNAG 2 cut(s) 756, 761
HpySE526I ACGT 7 cut(s) 107, 169, 258, 274, 287, 668, 719
Hsp92II CATG 4 cut(s) 205, 266, 572, 730
HspAI GCGC 1 cut(s) 612
KspAI GTTAAC 1 cut(s) 18
Kzo9I GATC 6 cut(s) 102, 188, 198, 397, 544, 615
LmnI GCTCC 4 cut(s) 112, 149, 584, 622
LpnPI CCDG 8 cut(s) 108, 111, 154, 495, 573, 612, 750, 768
LweI GCATC 2 cut(s) 546, 552
MaeI CTAG 1 cut(s) 320
MaeII ACGT 7 cut(s) 107, 169, 258, 274, 287, 668, 719
MaeIII GTNAC 3 cut(s) 277, 296, 494
MalI GATC 6 cut(s) 104, 190, 200, 399, 546, 617
MboI GATC 6 cut(s) 102, 188, 198, 397, 544, 615
MboII GAAGA 8 cut(s) 85, 138, 154, 252, 383, 451, 535, 551
MflI RGATCY 2 cut(s) 397, 544
MhlI GDGCHC 1 cut(s) 682
MluCI AATT 1 cut(s) 218
MluI ACGCGT 1 cut(s) 308
MlyI GAGTC 5 cut(s) 28, 70, 237, 414, 704
MmeI TCCRAC 5 cut(s) 62, 90, 190, 401, 408
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 2 cut(s) 17, 784
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 3 cut(s) 98, 141, 599
Mva1269I GAATGC 1 cut(s) 437
MvnI CGCG 4 cut(s) 310, 340, 425, 614
NdeII GATC 6 cut(s) 102, 188, 198, 397, 544, 615
NlaIII CATG 4 cut(s) 205, 266, 572, 730
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 7 cut(s) 253, 316, 334, 352, 373, 420, 733
PinAI ACCGGT 1 cut(s) 598
PkrI GCNGC 1 cut(s) 632
PleI GAGTC 5 cut(s) 28, 69, 237, 413, 704
PmaCI CACGTG 1 cut(s) 275
PmlI CACGTG 1 cut(s) 275
PpsI GAGTC 5 cut(s) 28, 69, 237, 413, 704
Ppu21I YACGTR 1 cut(s) 275
Psp1406I AACGTT 1 cut(s) 287
PspCI CACGTG 1 cut(s) 275
PspEI GGTNACC 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 752
PsuI RGATCY 2 cut(s) 397, 544
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 2 cut(s) 17, 784
SatI GCNGC 1 cut(s) 631
Sau3AI GATC 6 cut(s) 102, 188, 198, 397, 544, 615
Sau96I GGNCC 1 cut(s) 752
SchI GAGTC 5 cut(s) 28, 70, 237, 414, 704
SduI GDGCHC 1 cut(s) 682
SfaNI GCATC 2 cut(s) 546, 552
SinI GGWCC 1 cut(s) 752
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 1 cut(s) 218
SsiI CCGC 5 cut(s) 301, 323, 338, 630, 633
SspMI CTAG 1 cut(s) 320
TaaI ACNGT 4 cut(s) 15, 91, 500, 749
TaiI ACGT 7 cut(s) 110, 172, 261, 277, 290, 671, 722
TaqI TCGA 4 cut(s) 71, 152, 578, 687
TasI AATT 1 cut(s) 218
TauI GCSGC 1 cut(s) 633
TfiI GAWTC 7 cut(s) 253, 316, 334, 352, 373, 420, 733
Tru1I TTAA 2 cut(s) 17, 784
Tru9I TTAA 2 cut(s) 17, 784
TscAI CASTG 2 cut(s) 613, 754
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 3 cut(s) 251, 557, 746
TspGWI ACGGA 2 cut(s) 551, 635
TspRI CASTG 2 cut(s) 613, 754
VpaK11BI GGWCC 1 cut(s) 752
XapI RAATTY 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.