Prupe.2G043700_v2.0.a1

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015467
Physical Location & Seq
Forward (+)
4838449 .. 4839514
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G043700.1

Sequence Viewer

Length: 732 bp
ATGGCGGCACCACCGCTACCAACCGCGTCTCAAAACCTTAAACCAACTACGCCGCGGACGGTGCATACACCGTCGCCTATCTCACTCCAACCATCAACCAAAAAAAGCCCATCAAAACCTTCAAAACTCTTCCGGCGTTTTCGTGCAGTTTTCCGGTCATTTCCAATCATATCGCCCTCGTGCAAGATCCCCGTTTCGCTCCACGGGAGCCGCATGGGGGAAGGACACACACACATGCACATCCACGGGGGGACGCGGATGACAGGAACCCTATTTGGGTATCGTAAAGCTAGGATTAACCTGGTCATCCAGGAAAGCCCTAGATGCCTTCCCATCCTTGTCCTTGAGCTCGGGATACAAACAGGAAAGCTCCTTCAAGATATGGGAATGGGGCTTGTCCGGATAGCGCTAGAATGCGAAAAGAGGCCCGGGGATAAGACGAAGATCGTGGACGAGCCGATATGGTCGTTGTACTGCAATGGGAAGAAATCAGGGTATGGAGTGAGGAGAGAGGCGACCGAGGATGATCTGAGTGTGATGCAAGTTTTGCATGCAGTGTCCATGGGAGCCGGGGTTTTACCAAATGAAACAGAGTTGCCAGAGGGTGATTTAATGTACATGCGAGCACAGTTCGAACGTGTGGTAGGGTCGAGGGACTCAGAGACATATTACATGATGAATCCTGATGGGAACAATGGGCCTGAGCTCAGTGTGTTCTTCGTCAGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

244

Amino Acids

26.96

Weight (kDa)

9.53

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015467)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06990
fragaria_vesca FvH4_7g03890
malus_domestica MD07G1043800.v1.1
prunus_persica Prupe.2G043700_v2.0.a1
pyrus_communis pycom02g23680 pycom07g03140
rosa_chinensis RchiOBHm_Chr1g0327341
rosa_laevigata RLG00000029997
rosa_multiflora Rmu_sc0003600.1_g000036
rosa_roxburghii Rroxscaffold_4G00322730
rosa_rugosa Rorug01G0066800
rosa_samantha Rh1AG083500 Rh1BG066400 Rh1CG081400 Rh1DG087800
rosa_wichuraiana Rw1G006560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AccII CGCG 3 cut(s) 26, 55, 256
AccIII TCCGGA 1 cut(s) 399
AciI CCGC 7 cut(s) 5, 14, 24, 53, 55, 211, 256
AclWI GGATC 1 cut(s) 181
AfaI GTAC 2 cut(s) 473, 617
AfeI AGCGCT 1 cut(s) 408
AfiI CCNNNNNNNGG 2 cut(s) 217, 276
AflIII ACRYGT 1 cut(s) 637
AgsI TTSAA 2 cut(s) 123, 377
AjnI CCWGG 2 cut(s) 300, 309
AluBI AGCT 4 cut(s) 290, 349, 370, 706
AluI AGCT 4 cut(s) 290, 349, 370, 706
Alw21I GWGCWC 3 cut(s) 351, 628, 708
Alw26I GTCTC 2 cut(s) 33, 656
AlwI GGATC 1 cut(s) 181
Ama87I CYCGRG 2 cut(s) 350, 428
Aor13HI TCCGGA 1 cut(s) 399
Aor51HI AGCGCT 1 cut(s) 408
AoxI GGCC 2 cut(s) 425, 698
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 2 cut(s) 426, 698
AsuC2I CCSGG 3 cut(s) 429, 430, 571
AsuHPI GGTGA 1 cut(s) 617
AsuII TTCGAA 1 cut(s) 633
AvaI CYCGRG 2 cut(s) 350, 428
BanI GGYRCC 1 cut(s) 7
BanII GRGCYC 2 cut(s) 351, 708
BauI CACGAG 1 cut(s) 178
Bbv12I GWGCWC 3 cut(s) 351, 628, 708
BccI CCATC 4 cut(s) 100, 118, 341, 680
BciT130I CCWGG 2 cut(s) 302, 311
BciVI GTATCC 1 cut(s) 348
BcnI CCSGG 3 cut(s) 429, 430, 571
BcoDI GTCTC 2 cut(s) 33, 656
BfaI CTAG 3 cut(s) 291, 321, 410
BfoI RGCGCY 1 cut(s) 410
BfuI GTATCC 1 cut(s) 348
BisI GCNGC 3 cut(s) 6, 53, 211
BlsI GCNGC 3 cut(s) 7, 54, 212
Bme1390I CCNGG 5 cut(s) 302, 311, 429, 430, 571
BmeT110I CYCGRG 2 cut(s) 350, 428
BmgT120I GGNCC 2 cut(s) 426, 698
BmiI GGNNCC 4 cut(s) 9, 209, 268, 568
BmrFI CCNGG 5 cut(s) 302, 311, 429, 430, 571
BmsI GCATC 2 cut(s) 314, 528
Bpu10I CCTNAGC 1 cut(s) 702
Bpu14I TTCGAA 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 3 cut(s) 429, 430, 571
BsaJI CCNNGG 8 cut(s) 53, 202, 244, 428, 429, 519, 561, 570
BsaWI WCCGGW 2 cut(s) 153, 399
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 276
Bse3DI GCAATG 1 cut(s) 484
BseAI TCCGGA 1 cut(s) 399
BseBI CCWGG 2 cut(s) 302, 311
BseDI CCNNGG 8 cut(s) 53, 202, 244, 428, 429, 519, 561, 570
BseGI GGATG 5 cut(s) 240, 264, 306, 333, 529
BseLI CCNNNNNNNGG 2 cut(s) 217, 276
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 4 cut(s) 521, 672, 693, 721
BseRI GAGGAG 1 cut(s) 520
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 3 cut(s) 26, 55, 256
Bsh1285I CGRYCG 1 cut(s) 519
BshFI GGCC 2 cut(s) 427, 700
BshNI GGYRCC 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 519
BsiHKAI GWGCWC 3 cut(s) 351, 628, 708
BsiHKCI CYCGRG 2 cut(s) 350, 428
BsiSI CCGG 5 cut(s) 133, 154, 400, 429, 570
BslFI GGGAC 2 cut(s) 265, 668
BslI CCNNNNNNNGG 2 cut(s) 217, 276
BsmAI GTCTC 2 cut(s) 33, 656
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 2 cut(s) 265, 668
BsmI GAATGC 1 cut(s) 419
BsnI GGCC 2 cut(s) 427, 700
BsoBI CYCGRG 2 cut(s) 350, 428
Bsp119I TTCGAA 1 cut(s) 633
Bsp1286I GDGCHC 3 cut(s) 351, 628, 708
Bsp13I TCCGGA 1 cut(s) 399
Bsp1407I TGTACA 1 cut(s) 615
Bsp143I GATC 4 cut(s) 186, 444, 526, 726
Bsp19I CCATGG 1 cut(s) 561
BspACI CCGC 7 cut(s) 5, 14, 24, 53, 55, 211, 256
BspANI GGCC 2 cut(s) 427, 700
BspCNI CTCAG 4 cut(s) 522, 671, 694, 720
BspEI TCCGGA 1 cut(s) 399
BspFNI CGCG 3 cut(s) 26, 55, 256
BspLI GGNNCC 4 cut(s) 9, 209, 268, 568
BspPI GGATC 1 cut(s) 181
BspT104I TTCGAA 1 cut(s) 633
BspT107I GGYRCC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 615
BssECI CCNNGG 8 cut(s) 53, 202, 244, 428, 429, 519, 561, 570
BssMI GATC 4 cut(s) 186, 444, 526, 726
BssSI CACGAG 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 561
Bst2BI CACGAG 1 cut(s) 178
Bst2UI CCWGG 2 cut(s) 302, 311
Bst4CI ACNGT 3 cut(s) 61, 72, 630
Bst6I CTCTTC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 547
BstAUI TGTACA 1 cut(s) 615
BstBI TTCGAA 1 cut(s) 633
BstC8I GCNNGC 2 cut(s) 552, 624
BstDEI CTNAG 4 cut(s) 530, 658, 702, 707
BstDSI CCRYGG 4 cut(s) 53, 202, 244, 561
BstF5I GGATG 5 cut(s) 240, 264, 306, 333, 529
BstFNI CGCG 3 cut(s) 26, 55, 256
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 4 cut(s) 189, 447, 529, 729
BstMAI GTCTC 2 cut(s) 33, 656
BstMBI GATC 4 cut(s) 186, 444, 526, 726
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 3 cut(s) 61, 324, 547
BstNI CCWGG 2 cut(s) 302, 311
BstNSI RCATGY 3 cut(s) 238, 554, 622
BstSCI CCNGG 5 cut(s) 300, 309, 427, 428, 569
BstUI CGCG 3 cut(s) 26, 55, 256
BstX2I RGATCY 2 cut(s) 186, 726
BstYI RGATCY 2 cut(s) 186, 726
BsuI GTATCC 1 cut(s) 348
BsuRI GGCC 2 cut(s) 427, 700
BtgI CCRYGG 4 cut(s) 53, 202, 244, 561
BtsCI GGATG 5 cut(s) 240, 264, 306, 333, 529
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 2 cut(s) 561, 715
Cac8I GCNNGC 2 cut(s) 552, 624
CfoI GCGC 1 cut(s) 409
Cfr13I GGNCC 2 cut(s) 426, 698
Cfr42I CCGCGG 1 cut(s) 56
Cfr9I CCCGGG 1 cut(s) 428
CseI GACGC 2 cut(s) 15, 262
CsiI ACCWGGT 1 cut(s) 300
Csp6I GTAC 2 cut(s) 472, 616
CviAII CATG 6 cut(s) 214, 235, 551, 562, 619, 673
CviQI GTAC 2 cut(s) 472, 616
DdeI CTNAG 4 cut(s) 530, 658, 702, 707
DpnI GATC 4 cut(s) 188, 446, 528, 728
DpnII GATC 4 cut(s) 186, 444, 526, 726
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Ecl136II GAGCTC 2 cut(s) 349, 706
Eco130I CCWWGG 1 cut(s) 561
Eco24I GRGCYC 2 cut(s) 351, 708
Eco47III AGCGCT 1 cut(s) 408
Eco53kI GAGCTC 2 cut(s) 349, 706
Eco88I CYCGRG 2 cut(s) 350, 428
EcoICRI GAGCTC 2 cut(s) 349, 706
EcoRII CCWGG 2 cut(s) 300, 309
EcoT14I CCWWGG 1 cut(s) 561
EcoT38I GRGCYC 2 cut(s) 351, 708
ErhI CCWWGG 1 cut(s) 561
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 6 cut(s) 217, 238, 554, 565, 622, 676
FaqI GGGAC 2 cut(s) 265, 668
FatI CATG 6 cut(s) 213, 234, 550, 561, 618, 672
Fnu4HI GCNGC 3 cut(s) 6, 53, 211
FokI GGATG 5 cut(s) 227, 271, 293, 320, 536
FriOI GRGCYC 2 cut(s) 351, 708
Fsp4HI GCNGC 3 cut(s) 6, 53, 211
FspBI CTAG 3 cut(s) 291, 321, 410
GlaI GCGC 1 cut(s) 408
GluI GCNGC 3 cut(s) 6, 53, 211
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 2 cut(s) 427, 700
HapII CCGG 5 cut(s) 133, 154, 400, 429, 570
HgaI GACGC 2 cut(s) 15, 262
HhaI GCGC 1 cut(s) 409
Hin1II CATG 6 cut(s) 217, 238, 554, 565, 622, 676
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HinfI GANTC 2 cut(s) 656, 679
HpaII CCGG 5 cut(s) 133, 154, 400, 429, 570
HphI GGTGA 1 cut(s) 617
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 2 cut(s) 531, 661
Hpy188III TCNNGA 5 cut(s) 352, 377, 400, 683, 724
Hpy8I GTNNAC 1 cut(s) 451
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 4 cut(s) 129, 215, 338, 383
HpyCH4III ACNGT 3 cut(s) 61, 72, 630
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 8 cut(s) 64, 146, 183, 238, 477, 541, 550, 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 324, 547
HpyF3I CTNAG 4 cut(s) 530, 658, 702, 707
HpySE526I ACGT 1 cut(s) 637
Hsp92II CATG 6 cut(s) 217, 238, 554, 565, 622, 676
HspAI GCGC 1 cut(s) 407
Kpn2I TCCGGA 1 cut(s) 399
KspI CCGCGG 1 cut(s) 56
Kzo9I GATC 4 cut(s) 186, 444, 526, 726
LmnI GCTCC 4 cut(s) 204, 207, 375, 566
LweI GCATC 2 cut(s) 314, 528
MabI ACCWGGT 1 cut(s) 300
MaeI CTAG 3 cut(s) 291, 321, 410
MaeII ACGT 1 cut(s) 637
MalI GATC 4 cut(s) 188, 446, 528, 728
MboI GATC 4 cut(s) 186, 444, 526, 726
MboII GAAGA 4 cut(s) 121, 454, 496, 709
MflI RGATCY 2 cut(s) 186, 726
MhlI GDGCHC 3 cut(s) 351, 628, 708
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 7 cut(s) 187, 417, 498, 505, 514, 595, 645
MroI TCCGGA 1 cut(s) 399
MseI TTAA 3 cut(s) 39, 297, 611
MslI CAYNNNNRTG 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 5 cut(s) 133, 154, 400, 429, 570
MspR9I CCNGG 5 cut(s) 302, 311, 429, 430, 571
Mva1269I GAATGC 1 cut(s) 419
MvaI CCWGG 2 cut(s) 302, 311
MvnI CGCG 3 cut(s) 26, 55, 256
MwoI GCNNNNNNNGC 3 cut(s) 61, 324, 547
NciI CCSGG 3 cut(s) 429, 430, 571
NcoI CCATGG 1 cut(s) 561
NdeII GATC 4 cut(s) 186, 444, 526, 726
NlaIII CATG 6 cut(s) 217, 238, 554, 565, 622, 676
NlaIV GGNNCC 4 cut(s) 9, 209, 268, 568
NspI RCATGY 3 cut(s) 238, 554, 622
NspV TTCGAA 1 cut(s) 633
PaeI GCATGC 1 cut(s) 554
PctI GAATGC 1 cut(s) 419
PfeI GAWTC 1 cut(s) 679
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 3 cut(s) 7, 54, 212
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
Psp124BI GAGCTC 2 cut(s) 351, 708
Psp6I CCWGG 2 cut(s) 300, 309
PspGI CCWGG 2 cut(s) 300, 309
PspN4I GGNNCC 4 cut(s) 9, 209, 268, 568
PspPI GGNCC 2 cut(s) 426, 698
PsuI RGATCY 2 cut(s) 186, 726
RsaI GTAC 2 cut(s) 473, 617
RsaNI GTAC 2 cut(s) 472, 616
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 2 cut(s) 351, 708
SacII CCGCGG 1 cut(s) 56
SaqAI TTAA 3 cut(s) 39, 297, 611
SatI GCNGC 3 cut(s) 6, 53, 211
Sau3AI GATC 4 cut(s) 186, 444, 526, 726
Sau96I GGNCC 2 cut(s) 426, 698
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 5 cut(s) 302, 311, 429, 430, 571
SduI GDGCHC 3 cut(s) 351, 628, 708
SetI ASST 8 cut(s) 39, 121, 292, 303, 351, 372, 640, 708
SexAI ACCWGGT 1 cut(s) 300
SfaNI GCATC 2 cut(s) 314, 528
Sfr303I CCGCGG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 633
SgrBI CCGCGG 1 cut(s) 56
SmaI CCCGGG 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SphI GCATGC 1 cut(s) 554
SsiI CCGC 7 cut(s) 5, 14, 24, 53, 55, 211, 256
SspMI CTAG 3 cut(s) 291, 321, 410
SstI GAGCTC 2 cut(s) 351, 708
StyD4I CCNGG 5 cut(s) 300, 309, 427, 428, 569
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 3 cut(s) 61, 72, 630
TaiI ACGT 1 cut(s) 640
TaqI TCGA 2 cut(s) 633, 650
TaqII GACCGA 1 cut(s) 533
TatI WGTACW 2 cut(s) 471, 615
TauI GCSGC 3 cut(s) 8, 55, 213
TfiI GAWTC 1 cut(s) 679
Tru1I TTAA 3 cut(s) 39, 297, 611
Tru9I TTAA 3 cut(s) 39, 297, 611
TscAI CASTG 2 cut(s) 561, 715
TspDTI ATGAA 2 cut(s) 600, 692
TspMI CCCGGG 1 cut(s) 428
TspRI CASTG 2 cut(s) 561, 715
XceI RCATGY 3 cut(s) 238, 554, 622
XmaI CCCGGG 1 cut(s) 428
XspI CTAG 3 cut(s) 291, 321, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.