FvH4_7g03890

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015467
Physical Location & Seq
Reverse (-)
4431322 .. 4432492
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03890.t1

Sequence Viewer

Length: 759 bp
ATGGGGGAACCACAACCGCAGCCGCTGCCACTGCCTCCGTCCTCGCCGCGTTATCAAAAACCGGAAGCAAAGTCATCACCTGTGTTTGATGCACAAGCATCACCTGCCATCTCCCTCCAACCCGCATCAAACAAAAAAGGCCCCTCAAAATCCAAAAAGCTTCTCCGGCGCTTCCGTGCTGTTTTCCGGTCATTTCCCATCATAACCCCGTCGTGCAAGATCCCGGTGTCTCTCCACCACGGCGGCCGAATCGGGGAAGGACACATCCACGGTGGTATCAGGATGACTGGAACCCTATTTGGGAACCGCAGAGCTAGGGTGAGCCTTGCGATCCAAGAAAGCCCTAAGTGCCTCCCCGTTCTCGTAATTGAGCTAGGGATTCCCACGGGAAAGCTTCTCCAGGACATGGGAACTGGGTTAGTGAGGATAGCGCTCGAGTGTGAGAAGAGACCAGGTGATAAGACTAAGATCGTCGATGAGCCGATATGGATGTTGTATTGCAATGGGAAGAAATCGGGGTATGGGGTCCGGAGGGAAGCGACGGACGATGATTTGAGTGTCATGCAAGTATTGCAAGCAATTTCTATGGGAGCCGGGGTGATACCAAATGACGGCGGCGAGTTGCCGGACGGCGAGATCATGTACATGAGAGCACAGTTCGAGCGTGTGATCGGGTCCAAGGATTCGGAAACTTACTACATGTTGAATCCCGATGGGAATAACGGGCCTGAGCTTAGTGTGTTCTTCGTAAGGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

253

Amino Acids

27.54

Weight (kDa)

9.37

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 95 - 251 1.6e-68 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015467)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06990
fragaria_vesca FvH4_7g03890
malus_domestica MD07G1043800.v1.1
prunus_persica Prupe.2G043700_v2.0.a1
pyrus_communis pycom02g23680 pycom07g03140
rosa_chinensis RchiOBHm_Chr1g0327341
rosa_laevigata RLG00000029997
rosa_multiflora Rmu_sc0003600.1_g000036
rosa_roxburghii Rroxscaffold_4G00322730
rosa_rugosa Rorug01G0066800
rosa_samantha Rh1AG083500 Rh1BG066400 Rh1CG081400 Rh1DG087800
rosa_wichuraiana Rw1G006560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 406
AccII CGCG 1 cut(s) 49
AccIII TCCGGA 1 cut(s) 528
AciI CCGC 7 cut(s) 17, 23, 47, 123, 243, 307, 615
AclWI GGATC 2 cut(s) 214, 325
AcoI YGGCCR 1 cut(s) 244
AfaI GTAC 1 cut(s) 644
AfeI AGCGCT 1 cut(s) 432
AfiI CCNNNNNNNGG 4 cut(s) 253, 300, 406, 611
AflIII ACRYGT 1 cut(s) 699
AgsI TTSAA 1 cut(s) 706
AjnI CCWGG 2 cut(s) 399, 451
AluBI AGCT 5 cut(s) 160, 314, 373, 394, 733
AluI AGCT 5 cut(s) 160, 314, 373, 394, 733
Alw21I GWGCWC 1 cut(s) 655
Alw26I GTCTC 2 cut(s) 234, 442
AlwI GGATC 2 cut(s) 214, 325
AlwNI CAGNNNCTG 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 434
Aor13HI TCCGGA 1 cut(s) 528
Aor51HI AGCGCT 1 cut(s) 432
AoxI GGCC 3 cut(s) 139, 244, 725
ApeKI GCWGC 2 cut(s) 19, 25
AspLEI GCGC 2 cut(s) 171, 433
AspS9I GGNCC 4 cut(s) 140, 526, 675, 725
AsuC2I CCSGG 2 cut(s) 224, 595
AsuHPI GGTGA 5 cut(s) 69, 93, 331, 467, 610
AvaI CYCGRG 1 cut(s) 434
AvaII GGWCC 2 cut(s) 526, 675
BaeI ACNNNNGTAYC 2 cut(s) 259, 292
Bbv12I GWGCWC 1 cut(s) 655
BbvI GCAGC 2 cut(s) 12, 31
BccI CCATC 3 cut(s) 116, 206, 707
BceAI ACGGC 3 cut(s) 256, 628, 646
BciT130I CCWGG 2 cut(s) 401, 453
BcnI CCSGG 2 cut(s) 224, 595
BcoDI GTCTC 2 cut(s) 234, 442
BfaI CTAG 3 cut(s) 315, 374, 757
BfoI RGCGCY 2 cut(s) 172, 434
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 6 cut(s) 20, 23, 26, 47, 244, 616
BlsI GCNGC 6 cut(s) 21, 24, 27, 48, 245, 617
Bme1390I CCNGG 4 cut(s) 224, 401, 453, 595
Bme18I GGWCC 2 cut(s) 526, 675
BmeT110I CYCGRG 1 cut(s) 434
BmgT120I GGNCC 4 cut(s) 140, 526, 675, 725
BmiI GGNNCC 7 cut(s) 9, 142, 292, 305, 527, 592, 676
BmrFI CCNGG 4 cut(s) 224, 401, 453, 595
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 3 cut(s) 79, 107, 134
BmuI ACTGGG 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 383
Bpu10I CCTNAGC 1 cut(s) 729
BpuMI CCSGG 2 cut(s) 224, 595
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 5 cut(s) 238, 268, 384, 594, 678
BsaWI WCCGGW 3 cut(s) 61, 186, 528
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bsc4I CCNNNNNNNGG 4 cut(s) 253, 300, 406, 611
Bse1I ACTGG 2 cut(s) 292, 418
Bse3DI GCAATG 1 cut(s) 508
BseAI TCCGGA 1 cut(s) 528
BseBI CCWGG 2 cut(s) 401, 453
BseDI CCNNGG 5 cut(s) 238, 268, 384, 594, 678
BseGI GGATG 3 cut(s) 264, 288, 495
BseLI CCNNNNNNNGG 4 cut(s) 253, 300, 406, 611
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 720
BseNI ACTGG 2 cut(s) 292, 418
BseX3I CGGCCG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 12, 31
Bsh1236I CGCG 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 3 cut(s) 141, 246, 727
BsiEI CGRYCG 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 655
BsiHKCI CYCGRG 1 cut(s) 434
BsiSI CCGG 7 cut(s) 62, 166, 187, 224, 529, 594, 626
BslI CCNNNNNNNGG 4 cut(s) 253, 300, 406, 611
BsmAI GTCTC 2 cut(s) 234, 442
BsnI GGCC 3 cut(s) 141, 246, 727
Bso31I GGTCTC 1 cut(s) 442
BsoBI CYCGRG 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 655
Bsp13I TCCGGA 1 cut(s) 528
Bsp1407I TGTACA 1 cut(s) 642
Bsp143I GATC 5 cut(s) 219, 330, 468, 636, 669
BspACI CCGC 7 cut(s) 17, 23, 47, 123, 243, 307, 615
BspANI GGCC 3 cut(s) 141, 246, 727
BspCNI CTCAG 1 cut(s) 721
BspEI TCCGGA 1 cut(s) 528
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 7 cut(s) 9, 142, 292, 305, 527, 592, 676
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 2 cut(s) 214, 325
BspTNI GGTCTC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 508
BsrGI TGTACA 1 cut(s) 642
BsrI ACTGG 2 cut(s) 292, 418
BssECI CCNNGG 5 cut(s) 238, 268, 384, 594, 678
BssMI GATC 5 cut(s) 219, 330, 468, 636, 669
BssT1I CCWWGG 1 cut(s) 678
Bst2UI CCWGG 2 cut(s) 401, 453
Bst4CI ACNGT 2 cut(s) 272, 657
Bst6I CTCTTC 1 cut(s) 440
BstAPI GCANNNNNTGC 3 cut(s) 25, 104, 571
BstAUI TGTACA 1 cut(s) 642
BstC8I GCNNGC 1 cut(s) 576
BstDEI CTNAG 4 cut(s) 345, 465, 729, 734
BstDSI CCRYGG 3 cut(s) 238, 268, 384
BstF5I GGATG 3 cut(s) 264, 288, 495
BstFNI CGCG 1 cut(s) 49
BstH2I RGCGCY 2 cut(s) 172, 434
BstHHI GCGC 2 cut(s) 171, 433
BstKTI GATC 5 cut(s) 222, 333, 471, 639, 672
BstMAI GTCTC 2 cut(s) 234, 442
BstMBI GATC 5 cut(s) 219, 330, 468, 636, 669
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 6 cut(s) 25, 31, 104, 166, 348, 571
BstNI CCWGG 2 cut(s) 401, 453
BstNSI RCATGY 1 cut(s) 703
BstSCI CCNGG 4 cut(s) 222, 399, 451, 593
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 12, 31
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BstZI CGGCCG 1 cut(s) 244
BsuRI GGCC 3 cut(s) 141, 246, 727
BtgI CCRYGG 3 cut(s) 238, 268, 384
BtsCI GGATG 3 cut(s) 264, 288, 495
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 29
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 576
CaiI CAGNNNCTG 1 cut(s) 25
CfoI GCGC 2 cut(s) 171, 433
Cfr13I GGNCC 4 cut(s) 140, 526, 675, 725
CsiI ACCWGGT 1 cut(s) 451
Csp6I GTAC 1 cut(s) 643
CviAII CATG 5 cut(s) 406, 562, 640, 646, 700
CviQI GTAC 1 cut(s) 643
DdeI CTNAG 4 cut(s) 345, 465, 729, 734
DpnI GATC 5 cut(s) 221, 332, 470, 638, 671
DpnII GATC 5 cut(s) 219, 330, 468, 636, 669
EaeI YGGCCR 1 cut(s) 244
EagI CGGCCG 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
EclXI CGGCCG 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 678
Eco31I GGTCTC 1 cut(s) 442
Eco47I GGWCC 2 cut(s) 526, 675
Eco47III AGCGCT 1 cut(s) 432
Eco52I CGGCCG 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 434
EcoO109I RGGNCCY 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 399, 451
EcoT14I CCWWGG 1 cut(s) 678
ErhI CCWWGG 1 cut(s) 678
FaeI CATG 5 cut(s) 409, 565, 643, 649, 703
FaiI YATR 9 cut(s) 203, 407, 487, 522, 563, 587, 641, 647, 701
FatI CATG 5 cut(s) 405, 561, 639, 645, 699
FauI CCCGC 1 cut(s) 130
Fnu4HI GCNGC 6 cut(s) 20, 23, 26, 47, 244, 616
FokI GGATG 3 cut(s) 251, 295, 502
Fsp4HI GCNGC 6 cut(s) 20, 23, 26, 47, 244, 616
FspBI CTAG 3 cut(s) 315, 374, 757
GlaI GCGC 2 cut(s) 170, 432
GluI GCNGC 6 cut(s) 20, 23, 26, 47, 244, 616
GsuI CTGGAG 1 cut(s) 383
HaeII RGCGCY 2 cut(s) 172, 434
HaeIII GGCC 3 cut(s) 141, 246, 727
HapII CCGG 7 cut(s) 62, 166, 187, 224, 529, 594, 626
HhaI GCGC 2 cut(s) 171, 433
Hin1II CATG 5 cut(s) 409, 565, 643, 649, 703
Hin6I GCGC 2 cut(s) 169, 431
HinP1I GCGC 2 cut(s) 169, 431
HindIII AAGCTT 2 cut(s) 158, 392
HinfI GANTC 4 cut(s) 249, 379, 683, 706
HpaII CCGG 7 cut(s) 62, 166, 187, 224, 529, 594, 626
HphI GGTGA 5 cut(s) 69, 93, 331, 467, 610
Hpy188I TCNGA 1 cut(s) 688
Hpy188III TCNNGA 3 cut(s) 280, 529, 710
Hpy99I CGWCG 3 cut(s) 214, 476, 544
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 2 cut(s) 272, 657
HpyCH4V TGCA 5 cut(s) 92, 216, 501, 565, 574
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 31, 104, 166, 348, 571
HpyF3I CTNAG 4 cut(s) 345, 465, 729, 734
Hsp92II CATG 5 cut(s) 409, 565, 643, 649, 703
HspAI GCGC 2 cut(s) 169, 431
Kpn2I TCCGGA 1 cut(s) 528
Kzo9I GATC 5 cut(s) 219, 330, 468, 636, 669
LmnI GCTCC 1 cut(s) 590
Lsp1109I GCAGC 2 cut(s) 12, 31
LweI GCATC 3 cut(s) 79, 107, 134
MabI ACCWGGT 1 cut(s) 451
MaeI CTAG 3 cut(s) 315, 374, 757
MalI GATC 5 cut(s) 221, 332, 470, 638, 671
MboI GATC 5 cut(s) 219, 330, 468, 636, 669
MboII GAAGA 3 cut(s) 457, 520, 736
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 655
MluCI AATT 2 cut(s) 366, 579
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 7 cut(s) 45, 52, 125, 154, 362, 417, 525
MroI TCCGGA 1 cut(s) 528
MslI CAYNNNNRTG 1 cut(s) 644
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 7 cut(s) 62, 166, 187, 224, 529, 594, 626
MspR9I CCNGG 4 cut(s) 224, 401, 453, 595
MvaI CCWGG 2 cut(s) 401, 453
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 6 cut(s) 25, 31, 104, 166, 348, 571
NciI CCSGG 2 cut(s) 224, 595
NdeII GATC 5 cut(s) 219, 330, 468, 636, 669
NlaIII CATG 5 cut(s) 409, 565, 643, 649, 703
NlaIV GGNNCC 7 cut(s) 9, 142, 292, 305, 527, 592, 676
NspI RCATGY 1 cut(s) 703
PaeR7I CTCGAG 1 cut(s) 434
PaqCI CACCTGC 1 cut(s) 112
PciI ACATGT 1 cut(s) 699
PfeI GAWTC 4 cut(s) 249, 379, 683, 706
PflMI CCANNNNNTGG 1 cut(s) 406
PfoI TCCNGGA 1 cut(s) 399
PkrI GCNGC 6 cut(s) 21, 24, 27, 48, 245, 617
PscI ACATGT 1 cut(s) 699
Psp6I CCWGG 2 cut(s) 399, 451
PspGI CCWGG 2 cut(s) 399, 451
PspN4I GGNNCC 7 cut(s) 9, 142, 292, 305, 527, 592, 676
PspPI GGNCC 4 cut(s) 140, 526, 675, 725
PspXI VCTCGAGB 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 219
RsaI GTAC 1 cut(s) 644
RsaNI GTAC 1 cut(s) 643
RseI CAYNNNNRTG 1 cut(s) 644
SatI GCNGC 6 cut(s) 20, 23, 26, 47, 244, 616
Sau3AI GATC 5 cut(s) 219, 330, 468, 636, 669
Sau96I GGNCC 4 cut(s) 140, 526, 675, 725
ScrFI CCNGG 4 cut(s) 224, 401, 453, 595
SduI GDGCHC 1 cut(s) 655
SetI ASST 8 cut(s) 82, 106, 162, 316, 375, 396, 457, 735
SexAI ACCWGGT 1 cut(s) 451
SfaNI GCATC 3 cut(s) 79, 107, 134
Sfr274I CTCGAG 1 cut(s) 434
SinI GGWCC 2 cut(s) 526, 675
SlaI CTCGAG 1 cut(s) 434
SmiMI CAYNNNNRTG 1 cut(s) 644
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 2 cut(s) 366, 579
SsiI CCGC 7 cut(s) 17, 23, 47, 123, 243, 307, 615
SspMI CTAG 3 cut(s) 315, 374, 757
StyD4I CCNGG 4 cut(s) 222, 399, 451, 593
StyI CCWWGG 1 cut(s) 678
TaaI ACNGT 2 cut(s) 272, 657
TaqI TCGA 3 cut(s) 435, 474, 660
TasI AATT 2 cut(s) 366, 579
TatI WGTACW 1 cut(s) 642
TauI GCSGC 4 cut(s) 25, 49, 246, 618
TfiI GAWTC 4 cut(s) 249, 379, 683, 706
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 19, 25
TspGWI ACGGA 3 cut(s) 27, 164, 557
TspRI CASTG 1 cut(s) 36
Van91I CCANNNNNTGG 1 cut(s) 406
VpaK11BI GGWCC 2 cut(s) 526, 675
XceI RCATGY 1 cut(s) 703
XhoI CTCGAG 1 cut(s) 434
XspI CTAG 3 cut(s) 315, 374, 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.