MD07G1043800.v1.1

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015467
Physical Location & Seq
Reverse (-)
3762170 .. 3762916
747 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1043800.v1.1.491

Sequence Viewer

Length: 747 bp
ATGGCAGCGGTGGAAGCACAACCACCACCGCCACGGCTACCAGTGTCGTCGCCATGGTCCCAAAACCCCAAACCAACTACACCAACGGTGAATACACCTCCACATATCTCCCTCCAACCATCCACCAAAAAAGGCCCATCAAGACCTAAAAAACTCTTCCGGCGCTTTCGTGCTGTTTTCCGGTCGTTTCCAATCATATCTCCTTCATGCAAGATCCCCGTTTCGCTCCACGGAAACCGTATTGGAGACGGACACCTCCACGGAGGGACACGGATGACTGGAACCCTATTTGGGTGCCGTAAAGCTAGAGTTAACCTCGTTATCCAGGAAAGCCCTAGATGTCTTCCCATGCTTGTCCTTGAGCTTGGGATACCCACAGGAAAGCTTCTCCAAGATATGGGAACGGGGCTTGTTAGAATAGCCCTGGAGTGCGAAAAGAAACCGGGTGAGAAGACGAAGATCGTTGATGAGCCGATATGGGTGTTGTATTGCAATGGGAAGAAATCAGGGTACGGAGTTAGAAGAGAACCGACGGGGGATGGCTTGAGTGTGATGCAAGTGTTGCATGCAGTGTCCATGGGTGCTGGGGTGATACCGAATGAAACTGAGTTGCCAGATGGTGACTTAATGTACATGCGAGCACAGTTCGAACGTGTTGTTGGGTCTAGGGATTCGGAGACATATTATATGATGAATCCGGATGGAAACAATGGCCCTGAGCTCAGTGTGTTCTTCGTCAGGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

249

Amino Acids

27.26

Weight (kDa)

9.65

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 92 - 247 5.9e-67 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015467)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06990
fragaria_vesca FvH4_7g03890
malus_domestica MD07G1043800.v1.1
prunus_persica Prupe.2G043700_v2.0.a1
pyrus_communis pycom02g23680 pycom07g03140
rosa_chinensis RchiOBHm_Chr1g0327341
rosa_laevigata RLG00000029997
rosa_multiflora Rmu_sc0003600.1_g000036
rosa_roxburghii Rroxscaffold_4G00322730
rosa_rugosa Rorug01G0066800
rosa_samantha Rh1AG083500 Rh1BG066400 Rh1CG081400 Rh1DG087800
rosa_wichuraiana Rw1G006560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 294
AccB7I CCANNNNNTGG 1 cut(s) 397
AccIII TCCGGA 1 cut(s) 697
AciI CCGC 2 cut(s) 8, 29
AclWI GGATC 1 cut(s) 208
AfaI GTAC 2 cut(s) 512, 632
AfiI CCNNNNNNNGG 2 cut(s) 291, 397
AflIII ACRYGT 1 cut(s) 652
AjnI CCWGG 2 cut(s) 324, 423
AjuI GAANNNNNNNTTGG 2 cut(s) 642, 674
AluBI AGCT 4 cut(s) 305, 364, 385, 721
AluI AGCT 4 cut(s) 305, 364, 385, 721
Alw21I GWGCWC 2 cut(s) 643, 723
Alw26I GTCTC 2 cut(s) 240, 671
AlwI GGATC 1 cut(s) 208
Aor13HI TCCGGA 1 cut(s) 697
AoxI GGCC 2 cut(s) 133, 712
ApeKI GCWGC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 3 cut(s) 57, 134, 713
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 4 cut(s) 100, 458, 601, 632
AsuII TTCGAA 1 cut(s) 648
AvaII GGWCC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 294
BanII GRGCYC 1 cut(s) 723
BbsI GAAGAC 2 cut(s) 335, 458
Bbv12I GWGCWC 2 cut(s) 643, 723
BbvI GCAGC 1 cut(s) 17
BccI CCATC 5 cut(s) 127, 145, 533, 611, 695
BceAI ACGGC 2 cut(s) 50, 282
BciT130I CCWGG 2 cut(s) 326, 425
BciVI GTATCC 1 cut(s) 363
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 240, 671
BfaI CTAG 3 cut(s) 306, 336, 666
BfoI RGCGCY 1 cut(s) 166
BfuI GTATCC 1 cut(s) 363
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 3 cut(s) 326, 425, 444
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 3 cut(s) 57, 134, 713
BmiI GGNNCC 3 cut(s) 59, 283, 296
BmrFI CCNGG 3 cut(s) 326, 425, 444
BmsI GCATC 1 cut(s) 543
BpiI GAAGAC 2 cut(s) 335, 458
BplI GAGNNNNNCTC 2 cut(s) 300, 332
BpmI CTGGAG 1 cut(s) 446
Bpu10I CCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 648
BpuEI CTTGAG 2 cut(s) 380, 565
BpuMI CCSGG 1 cut(s) 444
BsaJI CCNNGG 6 cut(s) 32, 53, 229, 259, 423, 576
BsaWI WCCGGW 2 cut(s) 180, 697
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 397
Bse1I ACTGG 2 cut(s) 41, 283
Bse3DI GCAATG 1 cut(s) 499
BseAI TCCGGA 1 cut(s) 697
BseBI CCWGG 2 cut(s) 326, 425
BseDI CCNNGG 6 cut(s) 32, 53, 229, 259, 423, 576
BseGI GGATG 4 cut(s) 119, 279, 544, 706
BseLI CCNNNNNNNGG 2 cut(s) 291, 397
BseMI GCAATG 1 cut(s) 499
BseMII CTCAG 3 cut(s) 597, 708, 736
BseNI ACTGG 2 cut(s) 41, 283
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 584
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 2 cut(s) 135, 714
BshNI GGYRCC 1 cut(s) 294
BsiEI CGRYCG 1 cut(s) 185
BsiHKAI GWGCWC 2 cut(s) 643, 723
BsiSI CCGG 4 cut(s) 160, 181, 443, 698
BslFI GGGAC 2 cut(s) 43, 280
BslI CCNNNNNNNGG 2 cut(s) 291, 397
BsmAI GTCTC 2 cut(s) 240, 671
BsmBI CGTCTC 1 cut(s) 240
BsmFI GGGAC 2 cut(s) 43, 280
BsnI GGCC 2 cut(s) 135, 714
Bsp119I TTCGAA 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 643, 723
Bsp13I TCCGGA 1 cut(s) 697
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 2 cut(s) 213, 459
Bsp19I CCATGG 2 cut(s) 53, 576
BspACI CCGC 2 cut(s) 8, 29
BspANI GGCC 2 cut(s) 135, 714
BspCNI CTCAG 3 cut(s) 598, 709, 735
BspEI TCCGGA 1 cut(s) 697
BspLI GGNNCC 3 cut(s) 59, 283, 296
BspPI GGATC 1 cut(s) 208
BspT104I TTCGAA 1 cut(s) 648
BspT107I GGYRCC 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 499
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 2 cut(s) 41, 283
BssECI CCNNGG 6 cut(s) 32, 53, 229, 259, 423, 576
BssMI GATC 2 cut(s) 213, 459
BssT1I CCWWGG 2 cut(s) 53, 576
Bst2UI CCWGG 2 cut(s) 326, 425
Bst4CI ACNGT 3 cut(s) 88, 239, 645
Bst6I CTCTTC 2 cut(s) 161, 517
BstAPI GCANNNNNTGC 1 cut(s) 562
BstAUI TGTACA 1 cut(s) 630
BstBI TTCGAA 1 cut(s) 648
BstC8I GCNNGC 2 cut(s) 567, 639
BstDEI CTNAG 3 cut(s) 606, 717, 722
BstDSI CCRYGG 5 cut(s) 32, 53, 229, 259, 576
BstF5I GGATG 4 cut(s) 119, 279, 544, 706
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 2 cut(s) 216, 462
BstMAI GTCTC 2 cut(s) 240, 671
BstMBI GATC 2 cut(s) 213, 459
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 2 cut(s) 14, 562
BstNI CCWGG 2 cut(s) 326, 425
BstNSI RCATGY 2 cut(s) 569, 637
BstSCI CCNGG 3 cut(s) 324, 423, 442
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 2 cut(s) 335, 458
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 2 cut(s) 135, 714
BtgI CCRYGG 5 cut(s) 32, 53, 229, 259, 576
BtsCI GGATG 4 cut(s) 119, 279, 544, 706
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 3 cut(s) 48, 576, 730
Cac8I GCNNGC 2 cut(s) 567, 639
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 3 cut(s) 57, 134, 713
Csp6I GTAC 2 cut(s) 511, 631
CviAII CATG 6 cut(s) 54, 207, 349, 566, 577, 634
CviQI GTAC 2 cut(s) 511, 631
DdeI CTNAG 3 cut(s) 606, 717, 722
DpnI GATC 2 cut(s) 215, 461
DpnII GATC 2 cut(s) 213, 459
Eam1104I CTCTTC 2 cut(s) 161, 517
EarI CTCTTC 2 cut(s) 161, 517
Ecl136II GAGCTC 1 cut(s) 721
Eco130I CCWWGG 2 cut(s) 53, 576
Eco24I GRGCYC 1 cut(s) 723
Eco47I GGWCC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 721
EcoICRI GAGCTC 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 324, 423
EcoT14I CCWWGG 2 cut(s) 53, 576
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 2 cut(s) 53, 576
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 6 cut(s) 57, 210, 352, 569, 580, 637
FaqI GGGAC 2 cut(s) 43, 280
FatI CATG 6 cut(s) 53, 206, 348, 565, 576, 633
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 4 cut(s) 106, 286, 551, 713
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 3 cut(s) 306, 336, 666
GlaI GCGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 166
HaeIII GGCC 2 cut(s) 135, 714
HapII CCGG 4 cut(s) 160, 181, 443, 698
HhaI GCGC 1 cut(s) 165
Hin1II CATG 6 cut(s) 57, 210, 352, 569, 580, 637
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 2 cut(s) 671, 694
HpaI GTTAAC 1 cut(s) 313
HpaII CCGG 4 cut(s) 160, 181, 443, 698
HphI GGTGA 4 cut(s) 100, 458, 601, 632
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 1 cut(s) 676
Hpy188III TCNNGA 2 cut(s) 141, 698
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 2 cut(s) 52, 535
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 3 cut(s) 88, 239, 645
HpyCH4IV ACGT 1 cut(s) 652
HpyCH4V TGCA 5 cut(s) 210, 492, 556, 565, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 562
HpyF3I CTNAG 3 cut(s) 606, 717, 722
HpySE526I ACGT 1 cut(s) 652
Hsp92II CATG 6 cut(s) 57, 210, 352, 569, 580, 637
HspAI GCGC 1 cut(s) 163
Kpn2I TCCGGA 1 cut(s) 697
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 2 cut(s) 213, 459
LmnI GCTCC 1 cut(s) 231
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 543
MaeI CTAG 3 cut(s) 306, 336, 666
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 1 cut(s) 620
MalI GATC 2 cut(s) 215, 461
MboI GATC 2 cut(s) 213, 459
MboII GAAGA 7 cut(s) 148, 335, 463, 469, 511, 534, 724
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 2 cut(s) 643, 723
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 5 cut(s) 108, 122, 257, 266, 326
MroI TCCGGA 1 cut(s) 697
MseI TTAA 2 cut(s) 312, 626
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 4 cut(s) 160, 181, 443, 698
MspR9I CCNGG 3 cut(s) 326, 425, 444
MvaI CCWGG 2 cut(s) 326, 425
MwoI GCNNNNNNNGC 2 cut(s) 14, 562
NciI CCSGG 1 cut(s) 444
NcoI CCATGG 2 cut(s) 53, 576
NdeII GATC 2 cut(s) 213, 459
NlaIII CATG 6 cut(s) 57, 210, 352, 569, 580, 637
NlaIV GGNNCC 3 cut(s) 59, 283, 296
NmuCI GTSAC 1 cut(s) 620
NspI RCATGY 2 cut(s) 569, 637
NspV TTCGAA 1 cut(s) 648
PaeI GCATGC 1 cut(s) 569
PfeI GAWTC 2 cut(s) 671, 694
PflMI CCANNNNNTGG 1 cut(s) 397
PfoI TCCNGGA 1 cut(s) 324
PkrI GCNGC 1 cut(s) 7
Psp124BI GAGCTC 1 cut(s) 723
Psp6I CCWGG 2 cut(s) 324, 423
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 2 cut(s) 324, 423
PspN4I GGNNCC 3 cut(s) 59, 283, 296
PspPI GGNCC 3 cut(s) 57, 134, 713
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 2 cut(s) 512, 632
RsaNI GTAC 2 cut(s) 511, 631
SacI GAGCTC 1 cut(s) 723
SaqAI TTAA 2 cut(s) 312, 626
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 213, 459
Sau96I GGNCC 3 cut(s) 57, 134, 713
ScrFI CCNGG 3 cut(s) 326, 425, 444
SduI GDGCHC 2 cut(s) 643, 723
SetI ASST 9 cut(s) 100, 148, 258, 307, 318, 366, 387, 655, 723
SfaNI GCATC 1 cut(s) 543
SfuI TTCGAA 1 cut(s) 648
SinI GGWCC 1 cut(s) 57
SmlI CTYRAG 2 cut(s) 359, 544
SmoI CTYRAG 2 cut(s) 359, 544
SphI GCATGC 1 cut(s) 569
SsiI CCGC 2 cut(s) 8, 29
SspMI CTAG 3 cut(s) 306, 336, 666
SstI GAGCTC 1 cut(s) 723
StyD4I CCNGG 3 cut(s) 324, 423, 442
StyI CCWWGG 2 cut(s) 53, 576
TaaI ACNGT 3 cut(s) 88, 239, 645
TaiI ACGT 1 cut(s) 655
TaqI TCGA 1 cut(s) 648
TatI WGTACW 1 cut(s) 630
TfiI GAWTC 2 cut(s) 671, 694
Tru1I TTAA 2 cut(s) 312, 626
Tru9I TTAA 2 cut(s) 312, 626
TscAI CASTG 3 cut(s) 48, 576, 730
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 3 cut(s) 195, 615, 707
TspGWI ACGGA 5 cut(s) 246, 264, 276, 286, 528
TspRI CASTG 3 cut(s) 48, 576, 730
Van91I CCANNNNNTGG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 57
XceI RCATGY 2 cut(s) 569, 637
XspI CTAG 3 cut(s) 306, 336, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.