Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Reverse (-)

10831686 .. 10834690

Gene Structure 3005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0066800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCCTGGCATCAACGCTTTACTTCTATTACTCTCTTAGCTATGAATATACCGGTGATATCGCAGAAATTAGAGGGTGGACATGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGCTGTGAAGAGCCTTCAGCAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGAATGCTTCTCCAGAAAAATCGAAAGGCGGAAAAGATGTTGAAACTGTAGAAGCTGGACCTTCCTCGAGCAAGGATGCTTCTTCCAAAAAATCAACCTGTGGAAATGACGCTGAAACTTCAGGAGCTGGACCATTAAGCAAGGATGTGTCCCCTCAAACTGATGCAAGAGGTGTAAATGATGCTGAGTCATCAGGAGCTGGACCTTCCTTGAGCAAGGTTGCTTATGTAGAAAATGATCCAAGTGGTGGAAGTGAGGTTGAAACATCAGGACCTGTACCCTCCTCCTTAAGCAAGGTTTTTCTTCCATGCCCAAACCTTGAGGCTATGAGCAGAACATTACAGAGCAAGGATGATCTACCTAGCATGTTCTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

199

Amino Acids

20.98

Weight (kDa)

5.07

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	467
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	2 cut(s)	110, 452
AcuI	CTGAAG	2 cut(s)	143, 324
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	2 cut(s)	214, 467
AflII	CTTAAG	1 cut(s)	508
AgeI	ACCGGT	1 cut(s)	52
AgsI	TTSAA	4 cut(s)	128, 197, 263, 482
AjnI	CCWGG	2 cut(s)	5, 88
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	5 cut(s)	41, 193, 275, 347, 419
AluI	AGCT	5 cut(s)	41, 193, 275, 347, 419
AlwI	GGATC	2 cut(s)	110, 452
AlwNI	CAGNNNCTG	3 cut(s)	347, 419, 494
Ama87I	CYCGRG	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	106, 134
AsiGI	ACCGGT	1 cut(s)	52
AspS9I	GGNCC	4 cut(s)	278, 350, 422, 491
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	286
AvaII	GGWCC	4 cut(s)	278, 350, 422, 491
BbvI	GCAGC	2 cut(s)	118, 146
BccI	CCATC	1 cut(s)	87
BciT130I	CCWGG	2 cut(s)	7, 90
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	267
BfrI	CTTAAG	1 cut(s)	508
BisI	GCNGC	2 cut(s)	107, 135
BlsI	GCNGC	2 cut(s)	108, 136
Bme1390I	CCNGG	2 cut(s)	7, 90
Bme18I	GGWCC	4 cut(s)	278, 350, 422, 491
BmeT110I	CYCGRG	1 cut(s)	286
BmgT120I	GGNCC	4 cut(s)	278, 350, 422, 491
BmrFI	CCNGG	2 cut(s)	7, 90
BmsI	GCATC	5 cut(s)	19, 121, 286, 373, 391
BpmI	CTGGAG	2 cut(s)	72, 216
Bpu10I	CCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	3 cut(s)	105, 451, 560
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 467
Bse118I	RCCGGY	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	7, 90
BseGI	GGATG	4 cut(s)	98, 301, 370, 577
BseLI	CCNNNNNNNGG	2 cut(s)	214, 467
BseMII	CTCAG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	493
BseXI	GCAGC	2 cut(s)	118, 146
BsgI	GTGCAG	1 cut(s)	125
BshTI	ACCGGT	1 cut(s)	52
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	214, 467
BsmFI	GGGAC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	286
Bsp143I	GATC	3 cut(s)	115, 457, 574
BspACI	CCGC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	112
BspPI	GGATC	2 cut(s)	110, 452
BspQI	GCTCTTC	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BssMI	GATC	3 cut(s)	115, 457, 574
Bst2UI	CCWGG	2 cut(s)	7, 90
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	146
BstAFI	CTTAAG	1 cut(s)	508
BstAPI	GCANNNNNTGC	2 cut(s)	103, 224
BstDEI	CTNAG	3 cut(s)	37, 213, 405
BstF5I	GGATG	4 cut(s)	98, 301, 370, 577
BstKTI	GATC	3 cut(s)	118, 460, 577
BstMBI	GATC	3 cut(s)	115, 457, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 143, 224
BstNI	CCWGG	2 cut(s)	7, 90
BstNSI	RCATGY	2 cut(s)	86, 589
BstSCI	CCNGG	2 cut(s)	5, 88
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	118, 146
BtsCI	GGATG	4 cut(s)	98, 301, 370, 577
CaiI	CAGNNNCTG	3 cut(s)	347, 419, 494
CciI	TCATGA	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	4 cut(s)	278, 350, 422, 491
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	497
CspAI	ACCGGT	1 cut(s)	52
CviAII	CATG	6 cut(s)	83, 113, 143, 209, 528, 586
CviJI	RGCY	9 cut(s)	41, 109, 137, 156, 193, 275, 347, 419, 545
CviKI_1	RGCY	9 cut(s)	41, 109, 137, 156, 193, 275, 347, 419, 545
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	3 cut(s)	37, 213, 405
DpnI	GATC	3 cut(s)	117, 459, 576
DpnII	GATC	3 cut(s)	115, 457, 574
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	264
Eco32I	GATATC	1 cut(s)	60
Eco47I	GGWCC	4 cut(s)	278, 350, 422, 491
Eco57I	CTGAAG	2 cut(s)	143, 324
Eco88I	CYCGRG	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	2 cut(s)	5, 88
EcoRV	GATATC	1 cut(s)	60
FaeI	CATG	6 cut(s)	86, 116, 146, 212, 531, 589
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	6 cut(s)	82, 112, 142, 208, 527, 585
Fnu4HI	GCNGC	2 cut(s)	107, 135
FokI	GGATG	4 cut(s)	105, 308, 377, 584
Fsp4HI	GCNGC	2 cut(s)	107, 135
FspBI	CTAG	1 cut(s)	582
GluI	GCNGC	2 cut(s)	107, 135
GsuI	CTGGAG	2 cut(s)	72, 216
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	6 cut(s)	86, 116, 146, 212, 531, 589
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188III	TCNNGA	7 cut(s)	113, 128, 197, 233, 342, 414, 489
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	167, 291, 435
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	106, 134, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 143, 224
HpyF3I	CTNAG	3 cut(s)	37, 213, 405
Hsp92II	CATG	6 cut(s)	86, 116, 146, 212, 531, 589
Kzo9I	GATC	3 cut(s)	115, 457, 574
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	3 cut(s)	91, 344, 416
Lsp1109I	GCAGC	2 cut(s)	118, 146
LweI	GCATC	5 cut(s)	19, 121, 286, 373, 391
MaeI	CTAG	1 cut(s)	582
MalI	GATC	3 cut(s)	117, 459, 576
MboI	GATC	3 cut(s)	115, 457, 574
MboII	GAAGA	3 cut(s)	163, 294, 515
MluCI	AATT	2 cut(s)	68, 172
MlyI	GAGTC	1 cut(s)	416
MseI	TTAA	2 cut(s)	356, 509
MspCI	CTTAAG	1 cut(s)	508
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	7, 90
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	2 cut(s)	7, 90
MwoI	GCNNNNNNNGC	3 cut(s)	103, 143, 224
NdeII	GATC	3 cut(s)	115, 457, 574
NlaIII	CATG	6 cut(s)	86, 116, 146, 212, 531, 589
NspI	RCATGY	2 cut(s)	86, 589
PaeR7I	CTCGAG	1 cut(s)	286
PagI	TCATGA	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	146
PctI	GAATGC	1 cut(s)	229
PflMI	CCANNNNNTGG	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	88
PinAI	ACCGGT	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	108, 136
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PpuMI	RGGWCCY	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	2 cut(s)	5, 88
PspGI	CCWGG	2 cut(s)	5, 88
PspPI	GGNCC	4 cut(s)	278, 350, 422, 491
PspPPI	RGGWCCY	1 cut(s)	491
PspXI	VCTCGAGB	1 cut(s)	286
PstNI	CAGNNNCTG	3 cut(s)	347, 419, 494
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	356, 509
SatI	GCNGC	2 cut(s)	107, 135
Sau3AI	GATC	3 cut(s)	115, 457, 574
Sau96I	GGNCC	4 cut(s)	278, 350, 422, 491
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	2 cut(s)	7, 90
SfaNI	GCATC	5 cut(s)	19, 121, 286, 373, 391
SfcI	CTRYAG	1 cut(s)	267
Sfr274I	CTCGAG	1 cut(s)	286
SinI	GGWCC	4 cut(s)	278, 350, 422, 491
SlaI	CTCGAG	1 cut(s)	286
SmlI	CTYRAG	5 cut(s)	120, 286, 430, 508, 539
SmoI	CTYRAG	5 cut(s)	120, 286, 430, 508, 539
Sse9I	AATT	2 cut(s)	68, 172
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	5, 88
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	242, 287
TasI	AATT	2 cut(s)	68, 172
Tru1I	TTAA	2 cut(s)	356, 509
Tru9I	TTAA	2 cut(s)	356, 509
TseI	GCWGC	2 cut(s)	106, 134
TspDTI	ATGAA	2 cut(s)	59, 165
Van91I	CCANNNNNTGG	1 cut(s)	467
Vha464I	CTTAAG	1 cut(s)	508
VpaK11BI	GGWCC	4 cut(s)	278, 350, 422, 491
XceI	RCATGY	2 cut(s)	86, 589
XhoI	CTCGAG	1 cut(s)	286
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.