Rh1AG003800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000840
Physical Location & Seq
Reverse (-)
632200 .. 632692
493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG003800.1

Sequence Viewer

Length: 336 bp
ATGAATGCACAGACGACTTCGAGGCAACTTGCTGATAGGAAGGTGGAGGGGTTCGAGAAGAACATAACCAAGAGAGGTGCGGTCTCCTACTACTTTTCCGATCGGTCAAACGCCGAGGAATTCGAGGACTCGTTGGCCGCGAACGAGGTCGGGAGCTCCGGCGAGGGATCGACGTCGTCGGGGAGTGAGATTGGGCTGGAAGAGTGGTTGACAGGGATACTGGTTGAAGGAGGGGACGGAGATCTGTTGCTGCAGCAGAGCAACCAAGATGACCGGGTTTTGCAGTGGCTTCAAGCGCTTGATATGCAGGTTATGGGCGCGCAGACGAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.08

Weight (kDa)

4.25

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 298
AccII CGCG 2 cut(s) 140, 320
AciI CCGC 2 cut(s) 80, 138
AclWI GGATC 1 cut(s) 175
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 119
AcyI GRCGYC 1 cut(s) 173
AfeI AGCGCT 1 cut(s) 297
AgsI TTSAA 2 cut(s) 227, 293
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 1 cut(s) 175
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 250, 253
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 3 cut(s) 298, 320, 322
AsuC2I CCSGG 1 cut(s) 275
BanII GRGCYC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 237, 265
BciVI GTATCC 1 cut(s) 210
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 88
BfmI CTRYAG 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 298
BfuI GTATCC 1 cut(s) 210
BglII AGATCT 1 cut(s) 241
BisI GCNGC 3 cut(s) 138, 251, 254
BlsI GCNGC 3 cut(s) 139, 252, 255
Bme1390I CCNGG 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 225
BsePI GCGCGC 1 cut(s) 318
BseXI GCAGC 2 cut(s) 237, 265
Bsh1236I CGCG 2 cut(s) 140, 320
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 2 cut(s) 159, 274
BslFI GGGAC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 137
Bso31I GGTCTC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 3 cut(s) 100, 167, 241
BspACI CCGC 2 cut(s) 80, 138
BspANI GGCC 1 cut(s) 137
BspFNI CGCG 2 cut(s) 140, 320
BspMAI CTGCAG 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 88
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 114
BssHII GCGCGC 1 cut(s) 318
BssMI GATC 3 cut(s) 100, 167, 241
BssNI GRCGYC 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 320
BstFNI CGCG 2 cut(s) 140, 320
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 3 cut(s) 298, 320, 322
BstKTI GATC 3 cut(s) 103, 170, 244
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 3 cut(s) 100, 167, 241
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 295, 304
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 251
BstUI CGCG 2 cut(s) 140, 320
BstV1I GCAGC 2 cut(s) 237, 265
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 320
CfoI GCGC 3 cut(s) 298, 320, 322
CviJI RGCY 4 cut(s) 137, 156, 196, 289
CviKI_1 RGCY 4 cut(s) 137, 156, 196, 289
DpnI GATC 3 cut(s) 102, 169, 243
DpnII GATC 3 cut(s) 100, 167, 241
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Ecl136II GAGCTC 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 88
Eco47III AGCGCT 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 158
FaiI YATR 3 cut(s) 65, 305, 314
FaqI GGGAC 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 138, 251, 254
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 3 cut(s) 138, 251, 254
GlaI GCGC 3 cut(s) 297, 319, 321
GluI GCNGC 3 cut(s) 138, 251, 254
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 1 cut(s) 137
HapII CCGG 2 cut(s) 159, 274
HhaI GCGC 3 cut(s) 298, 320, 322
Hin1I GRCGYC 1 cut(s) 173
Hin6I GCGC 3 cut(s) 296, 318, 320
HinP1I GCGC 3 cut(s) 296, 318, 320
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 1 cut(s) 128
HpaII CCGG 2 cut(s) 159, 274
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 55, 151
Hpy8I GTNNAC 1 cut(s) 210
Hpy99I CGWCG 3 cut(s) 175, 178, 181
HpyAV CCTTC 2 cut(s) 34, 221
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 8, 253, 283, 307
HpyF10VI GCNNNNNNNGC 2 cut(s) 295, 304
HpySE526I ACGT 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 173
HspAI GCGC 3 cut(s) 296, 318, 320
Kzo9I GATC 3 cut(s) 100, 167, 241
LmnI GCTCC 2 cut(s) 153, 161
LpnPI CCDG 6 cut(s) 172, 182, 198, 206, 287, 293
Lsp1109I GCAGC 2 cut(s) 237, 265
MaeII ACGT 1 cut(s) 173
MalI GATC 3 cut(s) 102, 169, 243
MboI GATC 3 cut(s) 100, 167, 241
MboII GAAGA 2 cut(s) 70, 212
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 119
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 9 cut(s) 15, 40, 68, 109, 118, 139, 157, 224, 323
MspI CCGG 2 cut(s) 159, 274
MspR9I CCNGG 1 cut(s) 275
Mva1269I GAATGC 1 cut(s) 10
MvnI CGCG 2 cut(s) 140, 320
MwoI GCNNNNNNNGC 2 cut(s) 295, 304
NciI CCSGG 1 cut(s) 275
NdeII GATC 3 cut(s) 100, 167, 241
NmeAIII GCCGAG 1 cut(s) 139
PauI GCGCGC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PctI GAATGC 1 cut(s) 10
PflFI GACNNNGTC 1 cut(s) 175
PkrI GCNGC 3 cut(s) 139, 252, 255
Ple19I CGATCG 1 cut(s) 103
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Psp124BI GAGCTC 1 cut(s) 158
PstI CTGCAG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 175
PteI GCGCGC 1 cut(s) 318
PvuI CGATCG 1 cut(s) 103
SacI GAGCTC 1 cut(s) 158
SatI GCNGC 3 cut(s) 138, 251, 254
Sau3AI GATC 3 cut(s) 100, 167, 241
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 1 cut(s) 158
SetI ASST 7 cut(s) 45, 79, 150, 158, 176, 312, 334
SfcI CTRYAG 1 cut(s) 251
Sse9I AATT 1 cut(s) 119
SsiI CCGC 2 cut(s) 80, 138
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 273
TaiI ACGT 1 cut(s) 176
TaqI TCGA 4 cut(s) 20, 54, 123, 170
TaqII GACCGA 1 cut(s) 93
TasI AATT 1 cut(s) 119
TauI GCSGC 1 cut(s) 140
TscAI CASTG 1 cut(s) 290
TseI GCWGC 2 cut(s) 250, 253
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 1 cut(s) 290
Tth111I GACNNNGTC 1 cut(s) 175
XapI RAATTY 1 cut(s) 119
ZraI GACGTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.