Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Reverse (-)

12636823 .. 12638170

Gene Structure 1348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGAAACTTGTTCGAACTTCAATCCGAGTTCACCGGTCTATGAATCTTGAAGATTGGTGGTCTAGAACTCGAGATATCGGCGTTGACTCAAAATCGGGCTTAAATTGGAACAAACTTACCGTCGCAACTACAAGCCGCTCCGCCGTGCAAGACTGCCACGGACAGATAATTGAGCAGCAAGTGCTCATGGTGGCGAAGGTGGTGGAGGACAAGCTCGACGAGCAAATCACAACCCTAGATTGGGTGGACGACAACGATTTGGAGGTGTTAAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

92

Amino Acids

10.67

Weight (kDa)

5.1

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	138
AciI	CCGC	2 cut(s)	136, 141
AfiI	CCNNNNNNNGG	2 cut(s)	240, 241
AgeI	ACCGGT	1 cut(s)	33
AgsI	TTSAA	2 cut(s)	21, 50
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	175
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AsiGI	ACCGGT	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	23
AsuII	TTCGAA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	128
BfaI	CTAG	2 cut(s)	63, 236
BisI	GCNGC	2 cut(s)	136, 176
BlsI	GCNGC	2 cut(s)	137, 177
BmeT110I	CYCGRG	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	157
BsaWI	WCCGGW	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 241
Bse118I	RCCGGY	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	240, 241
BseXI	GCAGC	1 cut(s)	187
BshTI	ACCGGT	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	240, 241
BsoBI	CYCGRG	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	186
BspACI	CCGC	2 cut(s)	136, 141
BspT104I	TTCGAA	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	181
BstBI	TTCGAA	1 cut(s)	13
BstDSI	CCRYGG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 220
BstV1I	GCAGC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	33
CspAI	ACCGGT	1 cut(s)	33
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	3 cut(s)	99, 135, 214
CviKI_1	RGCY	3 cut(s)	99, 135, 214
EciI	GGCGGA	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	76
FaeI	CATG	1 cut(s)	190
FaiI	YATR	2 cut(s)	41, 188
FatI	CATG	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	136, 176
Fsp4HI	GCNGC	2 cut(s)	136, 176
FspBI	CTAG	2 cut(s)	63, 236
GluI	GCNGC	2 cut(s)	136, 176
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	43, 86
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	3 cut(s)	31, 85, 247
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	3 cut(s)	47, 63, 71
Hpy8I	GTNNAC	3 cut(s)	31, 85, 247
Hpy99I	CGWCG	2 cut(s)	125, 221
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 220
Hsp92II	CATG	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	63, 236
MbiI	CCGCTC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	2 cut(s)	103, 168
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	2 cut(s)	199, 256
MseI	TTAA	2 cut(s)	101, 269
MspI	CCGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	181, 220
NlaIII	CATG	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	13
PaeR7I	CTCGAG	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	43
PinAI	ACCGGT	1 cut(s)	33
PkrI	GCNGC	2 cut(s)	137, 177
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	101, 269
SatI	GCNGC	2 cut(s)	136, 176
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	3 cut(s)	201, 216, 267
Sfr274I	CTCGAG	1 cut(s)	69
SfuI	TTCGAA	1 cut(s)	13
SlaI	CTCGAG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	2 cut(s)	103, 168
SsiI	CCGC	2 cut(s)	136, 141
SspMI	CTAG	2 cut(s)	63, 236
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	3 cut(s)	13, 70, 216
TasI	AATT	2 cut(s)	103, 168
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	2 cut(s)	101, 269
Tru9I	TTAA	2 cut(s)	101, 269
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	2 cut(s)	17, 56
TspGWI	ACGGA	1 cut(s)	174
XbaI	TCTAGA	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	69
XspI	CTAG	2 cut(s)	63, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.