Rh3CG298300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000840
Physical Location & Seq
Forward (+)
30640313 .. 30641120
808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG298300.1

Sequence Viewer

Length: 249 bp
ATGGTGTCGAGGGTGGTGGAATCGGAAGTGAAGCCATGGCTGAGGCAGGTGGAGCTCCGATCTGCAGGTGCTATGATGATTGGAGGTGCATGTCGGTTAGCAGATGAGATGGTATGTAATCGTGCGCACCAATCTGCAGGTAGACTAGCTGCCTTAAACCTCAAATCTAATTCCAATGGGATATGGATGGATCAAGCTCCAACACTTGTTTTGGATGCTTTACAACTTGATTGTAACCATTTATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.95

Weight (kDa)

6.7

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 37, 56
Acc16I TGCGCA 1 cut(s) 126
Acc36I ACCTGC 3 cut(s) 37, 56, 128
AccI GTMKAC 1 cut(s) 142
AclWI GGATC 1 cut(s) 198
AluBI AGCT 3 cut(s) 55, 149, 197
AluI AGCT 3 cut(s) 55, 149, 197
Alw21I GWGCWC 1 cut(s) 57
AlwI GGATC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 57
BbvCI CCTCAGC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 103, 181
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 2 cut(s) 63, 135
BfuAI ACCTGC 3 cut(s) 37, 56, 128
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BmsI GCATC 1 cut(s) 205
Bpu10I CCTNAGC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 2 cut(s) 192, 220
BseMII CTCAG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 59, 190
Bsp19I CCATGG 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 33
BspMAI CTGCAG 2 cut(s) 67, 139
BspMI ACCTGC 3 cut(s) 37, 56, 128
BspPI GGATC 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 2 cut(s) 59, 190
BssT1I CCWWGG 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 41
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 192, 220
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 2 cut(s) 62, 193
BstMBI GATC 2 cut(s) 59, 190
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 93
BstSFI CTRYAG 2 cut(s) 63, 135
BstV1I GCAGC 1 cut(s) 136
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 2 cut(s) 192, 220
BveI ACCTGC 3 cut(s) 37, 56, 128
CfoI GCGC 1 cut(s) 127
CviAII CATG 2 cut(s) 36, 90
CviJI RGCY 5 cut(s) 34, 40, 55, 149, 197
CviKI_1 RGCY 5 cut(s) 34, 40, 55, 149, 197
DdeI CTNAG 1 cut(s) 41
DpnI GATC 2 cut(s) 61, 192
DpnII GATC 2 cut(s) 59, 190
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 2 cut(s) 39, 93
FaiI YATR 5 cut(s) 37, 74, 91, 115, 184
FatI CATG 2 cut(s) 35, 89
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 2 cut(s) 199, 227
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 150
FspAI RTGCGCAY 1 cut(s) 126
FspBI CTAG 1 cut(s) 146
FspI TGCGCA 1 cut(s) 126
GlaI GCGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 150
HhaI GCGC 1 cut(s) 127
Hin1II CATG 2 cut(s) 39, 93
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 2 cut(s) 25, 59
Hpy8I GTNNAC 1 cut(s) 143
HpyCH4V TGCA 3 cut(s) 65, 89, 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 2 cut(s) 39, 93
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 2 cut(s) 59, 190
LmnI GCTCC 3 cut(s) 52, 60, 202
LpnPI CCDG 3 cut(s) 32, 51, 123
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 61, 192
MboI GATC 2 cut(s) 59, 190
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 4 cut(s) 3, 36, 77, 170
MseI TTAA 2 cut(s) 155, 247
MwoI GCNNNNNNNGC 1 cut(s) 52
NcoI CCATGG 1 cut(s) 35
NdeII GATC 2 cut(s) 59, 190
NlaIII CATG 2 cut(s) 39, 93
NsbI TGCGCA 1 cut(s) 126
NspI RCATGY 1 cut(s) 93
PaqCI CACCTGC 2 cut(s) 37, 56
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 57
PstI CTGCAG 2 cut(s) 67, 139
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 155, 247
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 2 cut(s) 59, 190
SduI GDGCHC 1 cut(s) 57
SetI ASST 8 cut(s) 51, 57, 70, 88, 142, 151, 162, 199
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 2 cut(s) 63, 135
Sse9I AATT 1 cut(s) 169
SspMI CTAG 1 cut(s) 146
SstI GAGCTC 1 cut(s) 57
StyI CCWWGG 1 cut(s) 35
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 169
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 155, 247
Tru9I TTAA 2 cut(s) 155, 247
TseI GCWGC 1 cut(s) 149
XceI RCATGY 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 142
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.