Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

6869164 .. 6870656

Gene Structure 1493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG038900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAGGATATCAATCCTTGGAAGCTAGAGTCTGCATATGCCTTAGGTTCTAAGAAGTTGACGAAGAGGAAGATAATTGAGCAGCAAGTGTTGACGGTTGCGAAGACGGTGGAGGACAAGCTCGACGAGGAAATCACAGCCCTAGATCGGCTGGATGACGGTGATCTGGAGGCGCTCAGAGATCGGATGCTCCAGCAGATGAAGAAGATGGCAGAGAAGAGTAGCCGTTGGATCTCCCTTGGTCACGGCAAGTACATGGATTCGGACCCGGCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

92

Amino Acids

10.56

Weight (kDa)

5.41

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AclWI	GGATC	1 cut(s)	239
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	25, 121
AluI	AGCT	2 cut(s)	25, 121
AlwI	GGATC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	2 cut(s)	210, 262
BcnI	CCSGG	1 cut(s)	269
BfaI	CTAG	2 cut(s)	26, 143
BfoI	RGCGCY	1 cut(s)	176
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	267, 273
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	2 cut(s)	176, 188
BpuMI	CCSGG	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	17, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse21I	CCTNAGG	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	17, 238
BseGI	GGATG	2 cut(s)	160, 192
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	147
Bsp143I	GATC	4 cut(s)	145, 163, 181, 231
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	267, 273
BspPI	GGATC	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	17, 238
BssMI	GATC	4 cut(s)	145, 163, 181, 231
BssT1I	CCWWGG	2 cut(s)	17, 238
Bst4CI	ACNGT	3 cut(s)	97, 109, 161
Bst6I	CTCTTC	2 cut(s)	59, 212
BstDEI	CTNAG	3 cut(s)	43, 51, 176
BstF5I	GGATG	2 cut(s)	160, 192
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	4 cut(s)	148, 166, 184, 234
BstMBI	GATC	4 cut(s)	145, 163, 181, 231
BstSCI	CCNGG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	160, 192
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	5 cut(s)	25, 121, 140, 151, 225
CviKI_1	RGCY	5 cut(s)	25, 121, 140, 151, 225
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	3 cut(s)	43, 51, 176
DpnI	GATC	4 cut(s)	147, 165, 183, 233
DpnII	GATC	4 cut(s)	145, 163, 181, 231
Eam1104I	CTCTTC	2 cut(s)	59, 212
EarI	CTCTTC	2 cut(s)	59, 212
Eco130I	CCWWGG	2 cut(s)	17, 238
Eco32I	GATATC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	265
Eco81I	CCTNAGG	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	10
EcoT14I	CCWWGG	2 cut(s)	17, 238
ErhI	CCWWGG	2 cut(s)	17, 238
FaeI	CATG	1 cut(s)	259
FaiI	YATR	4 cut(s)	37, 39, 257, 277
FatI	CATG	1 cut(s)	255
FauNDI	CATATG	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	2 cut(s)	167, 199
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	2 cut(s)	26, 143
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	83
GsuI	CTGGAG	2 cut(s)	176, 188
HaeII	RGCGCY	1 cut(s)	176
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	2 cut(s)	60, 93
HindII	GTYRAC	2 cut(s)	60, 93
HinfI	GANTC	2 cut(s)	29, 260
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	60, 93
Hpy188I	TCNGA	3 cut(s)	179, 186, 265
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	2 cut(s)	60, 93
Hpy99I	CGWCG	1 cut(s)	128
HpyCH4III	ACNGT	3 cut(s)	97, 109, 161
HpyCH4V	TGCA	1 cut(s)	35
HpyF3I	CTNAG	3 cut(s)	43, 51, 176
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	4 cut(s)	145, 163, 181, 231
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	3 cut(s)	137, 152, 206
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	2 cut(s)	26, 143
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	4 cut(s)	147, 165, 183, 233
MboI	GATC	4 cut(s)	145, 163, 181, 231
MboII	GAAGA	6 cut(s)	76, 82, 115, 214, 217, 229
MflI	RGATCY	1 cut(s)	231
MluCI	AATT	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	4 cut(s)	60, 106, 121, 163
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	269
NciI	CCSGG	1 cut(s)	269
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	4 cut(s)	145, 163, 181, 231
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	2 cut(s)	267, 273
NmuCI	GTSAC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	84
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	267, 273
PspPI	GGNCC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	4 cut(s)	145, 163, 181, 231
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	269
SetI	ASST	3 cut(s)	27, 49, 123
SfaNI	GCATC	1 cut(s)	177
SinI	GGWCC	1 cut(s)	265
Sse9I	AATT	1 cut(s)	75
SspMI	CTAG	2 cut(s)	26, 143
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	2 cut(s)	17, 238
TaaI	ACNGT	3 cut(s)	97, 109, 161
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	75
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	265
XspI	CTAG	2 cut(s)	26, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.