Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

9667838 .. 9669739

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011469

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTGTCAAGGGCGGTGGAATCGGAAGTGAAGCCATGGCTGAGGCAGGTGGAGCTCCAATCTGCAGGTGCTATGATGATTAGGGGTGCATGTCGGTTAGCAGATGAGAAGATAATTGATCAGCAAGTGTTGACGGTGGGGAAGATGGTGGAGGACAAGCTCGACGAGGAAATCACAGCACTAGATCGGTTGGACAACGACGATCTGGAGGCCCTCAGAGATCGGATGCTCCAGCAGATGAAGAAGATGCCAGAGAAGCGCAGCCGTTGGATCTCCCTTGGCCACGGCGAGTACACGGATTTAGACCCGGCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

106

Amino Acids

12.05

Weight (kDa)

4.89

Isoelectric Point (pI)

63.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	37, 56
Acc36I	ACCTGC	2 cut(s)	37, 56
AccB1I	GGYRCC	1 cut(s)	310
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	280
AfaI	GTAC	1 cut(s)	293
AluBI	AGCT	2 cut(s)	55, 160
AluI	AGCT	2 cut(s)	55, 160
Alw21I	GWGCWC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	2 cut(s)	210, 280
ApeKI	GCWGC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	308
BalI	TGGCCA	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	57
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	2 cut(s)	249, 301
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	308
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	63
BfuAI	ACCTGC	2 cut(s)	37, 56
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	2 cut(s)	216, 237
BpmI	CTGGAG	2 cut(s)	215, 227
Bpu10I	CCTNAGC	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	308
BsaJI	CCNNGG	3 cut(s)	35, 277, 283
BseDI	CCNNGG	3 cut(s)	35, 277, 283
BseGI	GGATG	1 cut(s)	231
BseMII	CTCAG	2 cut(s)	32, 229
BseXI	GCAGC	1 cut(s)	273
BshFI	GGCC	2 cut(s)	212, 282
BshNI	GGYRCC	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	308
BsnI	GGCC	2 cut(s)	212, 282
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	5 cut(s)	118, 184, 202, 220, 270
Bsp19I	CCATGG	1 cut(s)	35
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	212, 282
BspCNI	CTCAG	2 cut(s)	33, 228
BspLI	GGNNCC	1 cut(s)	312
BspMAI	CTGCAG	1 cut(s)	67
BspMI	ACCTGC	2 cut(s)	37, 56
BspPI	GGATC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	310
BssECI	CCNNGG	3 cut(s)	35, 277, 283
BssMI	GATC	5 cut(s)	118, 184, 202, 220, 270
BssT1I	CCWWGG	2 cut(s)	35, 277
Bst4CI	ACNGT	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	41, 215
BstDSI	CCRYGG	2 cut(s)	35, 283
BstF5I	GGATG	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	5 cut(s)	121, 187, 205, 223, 273
BstMBI	GATC	5 cut(s)	118, 184, 202, 220, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 256
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	212, 282
BtgI	CCRYGG	2 cut(s)	35, 283
BtsCI	GGATG	1 cut(s)	231
BveI	ACCTGC	2 cut(s)	37, 56
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	292
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviAII	CATG	2 cut(s)	36, 90
CviJI	RGCY	7 cut(s)	34, 40, 55, 160, 212, 264, 282
CviKI_1	RGCY	7 cut(s)	34, 40, 55, 160, 212, 264, 282
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	2 cut(s)	41, 215
DpnI	GATC	5 cut(s)	120, 186, 204, 222, 272
DpnII	GATC	5 cut(s)	118, 184, 202, 220, 270
EaeI	YGGCCR	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	35, 277
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	211
EcoT14I	CCWWGG	2 cut(s)	35, 277
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	35, 277
FaeI	CATG	2 cut(s)	39, 93
FaiI	YATR	4 cut(s)	37, 74, 91, 316
FatI	CATG	2 cut(s)	35, 89
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	1 cut(s)	238
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	1 cut(s)	262
GsuI	CTGGAG	2 cut(s)	215, 227
HaeIII	GGCC	2 cut(s)	212, 282
HapII	CCGG	1 cut(s)	308
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	39, 93
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	132, 294
Hpy188I	TCNGA	3 cut(s)	25, 218, 225
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	2 cut(s)	132, 294
Hpy99I	CGWCG	2 cut(s)	167, 203
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	2 cut(s)	65, 89
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 256
HpyF3I	CTNAG	2 cut(s)	41, 215
Hsp92II	CATG	2 cut(s)	39, 93
HspAI	GCGC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	5 cut(s)	118, 184, 202, 220, 270
LmnI	GCTCC	3 cut(s)	52, 60, 234
LpnPI	CCDG	5 cut(s)	32, 51, 191, 245, 264
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	2 cut(s)	216, 237
MaeI	CTAG	1 cut(s)	182
MalI	GATC	5 cut(s)	120, 186, 204, 222, 272
MboI	GATC	5 cut(s)	118, 184, 202, 220, 270
MboII	GAAGA	4 cut(s)	121, 154, 253, 256
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	57
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	1 cut(s)	114
MluNI	TGGCCA	1 cut(s)	282
MmeI	TCCRAC	2 cut(s)	171, 248
MnlI	CCTC	5 cut(s)	36, 145, 160, 202, 224
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	282
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	52, 256
NciI	CCSGG	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	5 cut(s)	118, 184, 202, 220, 270
NlaIII	CATG	2 cut(s)	39, 93
NlaIV	GGNNCC	1 cut(s)	312
NspI	RCATGY	1 cut(s)	93
PaqCI	CACCTGC	2 cut(s)	37, 56
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SacI	GAGCTC	1 cut(s)	57
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	5 cut(s)	118, 184, 202, 220, 270
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	4 cut(s)	51, 57, 70, 162
SfaNI	GCATC	2 cut(s)	216, 237
SfcI	CTRYAG	1 cut(s)	63
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	2 cut(s)	35, 277
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	114
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	261
TspDTI	ATGAA	1 cut(s)	254
TspGWI	ACGGA	1 cut(s)	311
XceI	RCATGY	1 cut(s)	93
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.