Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

66305588 .. 66305952

Gene Structure 365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG417100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCGAACCGAGCAGTCCAAGAGATAATTGAGCAGCAACTGCTAACGGTGGCGAAGGTAGTGGAGGACAAGCTCGACGAGGAGATCGCAGCCCTAGATCTAGTGGACGACAACGATCTGGAGGTGCTCAGAGAGCGAAGGCTCCAGCAAATGAAGAAGATGGAGGAGAAGCACAGCCGTTGGATCTCCCTTGGCCACGACAAGTACATGGAGATCCTTTCTGAGAAGAAAGACAAAAGCCATGACCAAAAAATCGTTAGAAAGCTATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

90

Amino Acids

10.77

Weight (kDa)

5.62

Isoelectric Point (pI)

67.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	191, 208
AcoI	YGGCCR	1 cut(s)	193
AfaI	GTAC	1 cut(s)	206
AluBI	AGCT	2 cut(s)	73, 265
AluI	AGCT	2 cut(s)	73, 265
Alw21I	GWGCWC	1 cut(s)	129
AlwI	GGATC	2 cut(s)	191, 208
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	34, 89
BalI	TGGCCA	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	46, 101
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	162
BfaI	CTAG	2 cut(s)	95, 101
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	2 cut(s)	35, 90
BlsI	GCNGC	2 cut(s)	36, 91
BmiI	GGNNCC	1 cut(s)	143
BpmI	CTGGAG	2 cut(s)	128, 140
BsaJI	CCNNGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	142, 213
BseRI	GAGGAG	2 cut(s)	95, 179
BseXI	GCAGC	2 cut(s)	46, 101
BshFI	GGCC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	5 cut(s)	84, 97, 115, 183, 213
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	2 cut(s)	141, 214
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	2 cut(s)	191, 208
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	5 cut(s)	84, 97, 115, 183, 213
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	128, 222
BstKTI	GATC	5 cut(s)	87, 100, 118, 186, 216
BstMBI	GATC	5 cut(s)	84, 97, 115, 183, 213
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 40, 133
BstV1I	GCAGC	2 cut(s)	46, 101
BstX2I	RGATCY	3 cut(s)	97, 183, 213
BstYI	RGATCY	3 cut(s)	97, 183, 213
BsuRI	GGCC	1 cut(s)	195
CaiI	CAGNNNCTG	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	2 cut(s)	208, 242
CviJI	RGCY	7 cut(s)	73, 92, 142, 177, 195, 240, 265
CviKI_1	RGCY	7 cut(s)	73, 92, 142, 177, 195, 240, 265
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	128, 222
DpnI	GATC	5 cut(s)	86, 99, 117, 185, 215
DpnII	GATC	5 cut(s)	84, 97, 115, 183, 213
EaeI	YGGCCR	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	2 cut(s)	211, 245
FaiI	YATR	3 cut(s)	209, 243, 268
FatI	CATG	2 cut(s)	207, 241
Fnu4HI	GCNGC	2 cut(s)	35, 90
Fsp4HI	GCNGC	2 cut(s)	35, 90
FspBI	CTAG	2 cut(s)	95, 101
GluI	GCNGC	2 cut(s)	35, 90
GsuI	CTGGAG	2 cut(s)	128, 140
HaeIII	GGCC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	211, 245
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	131, 223
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	49, 132
HpyCH4III	ACNGT	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 40, 133
HpyF3I	CTNAG	2 cut(s)	128, 222
Hsp92II	CATG	2 cut(s)	211, 245
Kzo9I	GATC	5 cut(s)	84, 97, 115, 183, 213
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	2 cut(s)	104, 158
Lsp1109I	GCAGC	2 cut(s)	46, 101
MaeI	CTAG	2 cut(s)	95, 101
MalI	GATC	5 cut(s)	86, 99, 117, 185, 215
MboI	GATC	5 cut(s)	84, 97, 115, 183, 213
MboII	GAAGA	3 cut(s)	166, 169, 238
MflI	RGATCY	3 cut(s)	97, 183, 213
MhlI	GDGCHC	1 cut(s)	129
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	1 cut(s)	27
MluNI	TGGCCA	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	4 cut(s)	58, 73, 115, 157
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	11, 40, 133
NdeII	GATC	5 cut(s)	84, 97, 115, 183, 213
NlaIII	CATG	2 cut(s)	211, 245
NlaIV	GGNNCC	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	36, 91
PspN4I	GGNNCC	1 cut(s)	143
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	3 cut(s)	97, 183, 213
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SatI	GCNGC	2 cut(s)	35, 90
Sau3AI	GATC	5 cut(s)	84, 97, 115, 183, 213
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	4 cut(s)	60, 75, 126, 267
Sse9I	AATT	1 cut(s)	27
SspMI	CTAG	2 cut(s)	95, 101
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	204
TseI	GCWGC	2 cut(s)	34, 89
TspDTI	ATGAA	1 cut(s)	167
XspI	CTAG	2 cut(s)	95, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.