Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016786.1

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Reverse (-)

781 .. 1558

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016786.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgcaggcaaagcacataacctcctccaaggccctccatcagcccccctcatctccaactagggttacctggatcgcgggtcgtagcggtgcgaatacgcgcgatttgtcgccgcggcctcactacccctccatgccaaagattccgaagggtgtggtgacggaggagaccactatggtggtgggcaccgagtccaaggccgtgttctcagtcatcggcatgacctgctccgcctgcgcgggatcggtagagaaggctgtgaagaggctacccgggattcgcgaggcggtggtcgacgtgctcaacaaccgtgcccaagtcatgttcttccccaatttcgttaacgtaaagtccattactttactctttcttcgccgtgagaatcgttttgttggatcacttggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

135

Amino Acids

14.69

Weight (kDa)

10.48

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	6 cut(s)	77, 100, 102, 115, 239, 282
AciI	CCGC	7 cut(s)	77, 87, 113, 115, 231, 239, 287
AclWI	GGATC	3 cut(s)	80, 250, 403
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AleI	CACNNNNGTG	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	3 cut(s)	80, 250, 403
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	3 cut(s)	30, 116, 198
AspLEI	GCGC	2 cut(s)	102, 239
AspS9I	GGNCC	1 cut(s)	31
AsuC2I	CCSGG	2 cut(s)	273, 274
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	272
BaeGI	GKGCMC	2 cut(s)	188, 316
BanI	GGYRCC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	303
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	2 cut(s)	185, 360
BciT130I	CCWGG	1 cut(s)	70
BcnI	CCSGG	2 cut(s)	273, 274
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	2 cut(s)	113, 116
BlsI	GCNGC	2 cut(s)	114, 117
Bme1390I	CCNGG	3 cut(s)	70, 273, 274
BmeT110I	CYCGRG	1 cut(s)	272
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	3 cut(s)	70, 273, 274
BpuMI	CCSGG	2 cut(s)	273, 274
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	4 cut(s)	27, 113, 195, 272
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 113, 143
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	4 cut(s)	27, 113, 195, 272
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	2 cut(s)	13, 179
BseSI	GKGCMC	2 cut(s)	188, 316
Bsh1236I	CGCG	6 cut(s)	77, 100, 102, 115, 239, 282
BshFI	GGCC	3 cut(s)	32, 118, 200
BshNI	GGYRCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	32, 118, 200
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	3 cut(s)	188, 303, 316
Bsp143I	GATC	3 cut(s)	72, 242, 395
Bsp68I	TCGCGA	1 cut(s)	282
BspACI	CCGC	7 cut(s)	77, 87, 113, 115, 231, 239, 287
BspANI	GGCC	3 cut(s)	32, 118, 200
BspCNI	CTCAG	1 cut(s)	221
BspFNI	CGCG	6 cut(s)	77, 100, 102, 115, 239, 282
BspLI	GGNNCC	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	3 cut(s)	80, 250, 403
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	161
BssECI	CCNNGG	4 cut(s)	27, 113, 195, 272
BssMI	GATC	3 cut(s)	72, 242, 395
BssT1I	CCWWGG	2 cut(s)	27, 195
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	6, 235
BstDEI	CTNAG	1 cut(s)	208
BstDSI	CCRYGG	1 cut(s)	113
BstEII	GGTNACC	1 cut(s)	64
BstFNI	CGCG	6 cut(s)	77, 100, 102, 115, 239, 282
BstHHI	GCGC	2 cut(s)	102, 239
BstKTI	GATC	3 cut(s)	75, 245, 398
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	3 cut(s)	72, 242, 395
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 225, 234
BstNI	CCWGG	1 cut(s)	70
BstPI	GGTNACC	1 cut(s)	64
BstSCI	CCNGG	3 cut(s)	68, 271, 272
BstSLI	GKGCMC	2 cut(s)	188, 316
BstUI	CGCG	6 cut(s)	77, 100, 102, 115, 239, 282
BstXI	CCANNNNNNTGG	1 cut(s)	178
BsuRI	GGCC	3 cut(s)	32, 118, 200
BtgI	CCRYGG	1 cut(s)	113
BtrI	CACGTC	1 cut(s)	298
BtuMI	TCGCGA	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	2 cut(s)	6, 235
CfoI	GCGC	2 cut(s)	102, 239
Cfr13I	GGNCC	1 cut(s)	31
Cfr42I	CCGCGG	1 cut(s)	116
Cfr9I	CCCGGG	1 cut(s)	272
CviAII	CATG	3 cut(s)	133, 220, 322
CviJI	RGCY	6 cut(s)	32, 43, 118, 200, 257, 268
CviKI_1	RGCY	6 cut(s)	32, 43, 118, 200, 257, 268
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	3 cut(s)	74, 244, 397
DpnII	GATC	3 cut(s)	72, 242, 395
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
EciI	GGCGGA	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	27, 195
Eco31I	GGTCTC	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	272
Eco91I	GGTNACC	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	2 cut(s)	27, 195
ErhI	CCWWGG	2 cut(s)	27, 195
FaeI	CATG	3 cut(s)	136, 223, 325
FaiI	YATR	5 cut(s)	17, 134, 176, 221, 323
FatI	CATG	3 cut(s)	132, 219, 321
FauI	CCCGC	2 cut(s)	70, 232
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	113, 116
Fsp4HI	GCNGC	2 cut(s)	113, 116
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	2 cut(s)	101, 238
GluI	GCNGC	2 cut(s)	113, 116
HaeIII	GGCC	3 cut(s)	32, 118, 200
HapII	CCGG	1 cut(s)	273
HhaI	GCGC	2 cut(s)	102, 239
Hin1II	CATG	3 cut(s)	136, 223, 325
Hin6I	GCGC	2 cut(s)	100, 237
HinP1I	GCGC	2 cut(s)	100, 237
HincII	GTYRAC	2 cut(s)	295, 343
HindII	GTYRAC	2 cut(s)	295, 343
HinfI	GANTC	4 cut(s)	142, 191, 277, 382
HpaI	GTTAAC	1 cut(s)	343
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	295, 343
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	2 cut(s)	295, 343
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	2 cut(s)	142, 247
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	2 cut(s)	297, 345
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 225, 234
HpyF3I	CTNAG	1 cut(s)	208
HpySE526I	ACGT	2 cut(s)	297, 345
Hsp92II	CATG	3 cut(s)	136, 223, 325
HspAI	GCGC	2 cut(s)	100, 237
KspAI	GTTAAC	1 cut(s)	343
KspI	CCGCGG	1 cut(s)	116
Kzo9I	GATC	3 cut(s)	72, 242, 395
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	5 cut(s)	55, 82, 238, 247, 286
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	2 cut(s)	297, 345
MaeIII	GTNAC	2 cut(s)	64, 157
MalI	GATC	3 cut(s)	74, 244, 397
MboI	GATC	3 cut(s)	72, 242, 395
MboII	GAAGA	3 cut(s)	274, 319, 362
MhlI	GDGCHC	3 cut(s)	188, 303, 316
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	2 cut(s)	80, 373
MnlI	CCTC	9 cut(s)	31, 34, 44, 58, 129, 139, 157, 258, 277
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	3 cut(s)	176, 218, 403
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	3 cut(s)	70, 273, 274
MvaI	CCWGG	1 cut(s)	70
MvnI	CGCG	6 cut(s)	77, 100, 102, 115, 239, 282
MwoI	GCNNNNNNNGC	3 cut(s)	10, 225, 234
NciI	CCSGG	2 cut(s)	273, 274
NdeII	GATC	3 cut(s)	72, 242, 395
NlaIII	CATG	3 cut(s)	136, 223, 325
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	157
NruI	TCGCGA	1 cut(s)	282
OliI	CACNNNNGTG	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	142, 277, 382
PkrI	GCNGC	2 cut(s)	114, 117
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	68
PspEI	GGTNACC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	31
RruI	TCGCGA	1 cut(s)	282
RseI	CAYNNNNRTG	3 cut(s)	176, 218, 403
SacII	CCGCGG	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	2 cut(s)	113, 116
Sau3AI	GATC	3 cut(s)	72, 242, 395
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	70, 273, 274
SduI	GDGCHC	3 cut(s)	188, 303, 316
SetI	ASST	5 cut(s)	23, 71, 227, 300, 348
Sfr303I	CCGCGG	1 cut(s)	116
SgrBI	CCGCGG	1 cut(s)	116
SmaI	CCCGGG	1 cut(s)	274
SmiMI	CAYNNNNRTG	3 cut(s)	176, 218, 403
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	7 cut(s)	77, 87, 113, 115, 231, 239, 287
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	3 cut(s)	68, 271, 272
StyI	CCWWGG	2 cut(s)	27, 195
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	2 cut(s)	300, 348
TaqI	TCGA	1 cut(s)	294
TasI	AATT	1 cut(s)	334
TauI	GCSGC	2 cut(s)	115, 118
TfiI	GAWTC	3 cut(s)	142, 277, 382
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	176
TspMI	CCCGGG	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmaI	CCCGGG	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.