Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002892.1

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

76538 .. 77506

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002892.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atggtggcgaagacggtggatgacaagctcgacaaggaaatcgcagccctagatcggctagaggcgctcagagatcgaatgctccagcagatgaagaagatgacggagaagcgcagctgttggatctcccttggccacggcgaagagagagtacctttgtttggggaaaggagagaagagaagcagagattgagaagagggcgcctccaacgccaaaccatgacggagcgcacaaaaatggcaccactacagcggcgccaccaccactaccacctgttccggtatcttattcctctcacttctgccgtctccgccgtctccacctattgctggaaagcggcaattaggtggcatttgctgggaattgtggcattaatttggacaaaagaaaagggacatgtgggaggaagtgttggtagtagtggcggtgaggggggtgttgcagcagcctttggctgcaacgtgagaagtgatgatggtggaagtggcggtggcaatggtgaggatgaagtgctgtggcgatgggcaggggaggggaggagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

181

Amino Acids

20.45

Weight (kDa)

9.9

Isoelectric Point (pI)

64.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	201, 241, 255
AciI	CCGC	5 cut(s)	253, 312, 338, 426, 489
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	133
AcyI	GRCGYC	2 cut(s)	202, 256
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	3 cut(s)	54, 161, 330
AflIII	ACRYGT	1 cut(s)	397
AluBI	AGCT	2 cut(s)	28, 117
AluI	AGCT	2 cut(s)	28, 117
Alw26I	GTCTC	2 cut(s)	313, 322
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	5 cut(s)	44, 114, 443, 446, 456
AseI	ATTAAT	1 cut(s)	374
AspLEI	GCGC	5 cut(s)	67, 114, 204, 231, 258
AsuHPI	GGTGA	2 cut(s)	440, 512
BalI	TGGCCA	1 cut(s)	135
BanI	GGYRCC	3 cut(s)	201, 241, 255
BarI	GAAGNNNNNNTAC	2 cut(s)	135, 167
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	5 cut(s)	56, 126, 443, 455, 458
BccI	CCATC	2 cut(s)	470, 516
BceAI	ACGGC	3 cut(s)	154, 290, 299
BcoDI	GTCTC	2 cut(s)	313, 322
BfaI	CTAG	2 cut(s)	50, 59
BfmI	CTRYAG	1 cut(s)	248
BfoI	RGCGCY	3 cut(s)	68, 205, 259
BisI	GCNGC	7 cut(s)	45, 115, 254, 339, 444, 447, 457
BlsI	GCNGC	7 cut(s)	46, 116, 255, 340, 445, 448, 458
BmiI	GGNNCC	3 cut(s)	203, 243, 257
BpiI	GAAGAC	1 cut(s)	17
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
BpmI	CTGGAG	1 cut(s)	68
BsaHI	GRCGYC	2 cut(s)	202, 256
BsaJI	CCNNGG	2 cut(s)	130, 136
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 161, 330
Bse3DI	GCAATG	1 cut(s)	502
BseDI	CCNNGG	2 cut(s)	130, 136
BseGI	GGATG	2 cut(s)	25, 511
BseLI	CCNNNNNNNGG	3 cut(s)	54, 161, 330
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	1 cut(s)	82
BseXI	GCAGC	5 cut(s)	56, 126, 443, 455, 458
BseYI	CCCAGC	1 cut(s)	358
BshFI	GGCC	1 cut(s)	135
BshNI	GGYRCC	3 cut(s)	201, 241, 255
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	3 cut(s)	54, 161, 330
BsmAI	GTCTC	2 cut(s)	313, 322
BsmBI	CGTCTC	2 cut(s)	313, 322
BsmFI	GGGAC	1 cut(s)	408
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	52, 73, 123
BspACI	CCGC	5 cut(s)	253, 312, 338, 426, 489
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	3 cut(s)	203, 243, 257
BspPI	GGATC	1 cut(s)	131
BspT107I	GGYRCC	3 cut(s)	201, 241, 255
BsrDI	GCAATG	1 cut(s)	502
BssECI	CCNNGG	2 cut(s)	130, 136
BssMI	GATC	3 cut(s)	52, 73, 123
BssNI	GRCGYC	2 cut(s)	202, 256
BssT1I	CCWWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	3 cut(s)	138, 171, 190
BstACI	GRCGYC	2 cut(s)	202, 256
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	25, 511
BstH2I	RGCGCY	3 cut(s)	68, 205, 259
BstHHI	GCGC	5 cut(s)	67, 114, 204, 231, 258
BstKTI	GATC	3 cut(s)	55, 76, 126
BstMAI	GTCTC	2 cut(s)	313, 322
BstMBI	GATC	3 cut(s)	52, 73, 123
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 210, 311
BstNSI	RCATGY	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	248
BstV1I	GCAGC	5 cut(s)	56, 126, 443, 455, 458
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	25, 511
CfoI	GCGC	5 cut(s)	67, 114, 204, 231, 258
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	2 cut(s)	220, 398
CviJI	RGCY	7 cut(s)	28, 47, 58, 117, 135, 449, 456
CviKI_1	RGCY	7 cut(s)	28, 47, 58, 117, 135, 449, 456
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	1 cut(s)	68
DinI	GGCGCC	2 cut(s)	203, 257
DpnI	GATC	3 cut(s)	54, 75, 125
DpnII	GATC	3 cut(s)	52, 73, 123
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	3 cut(s)	138, 171, 190
EarI	CTCTTC	3 cut(s)	138, 171, 190
EciI	GGCGGA	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	130
EgeI	GGCGCC	2 cut(s)	203, 257
EheI	GGCGCC	2 cut(s)	203, 257
ErhI	CCWWGG	1 cut(s)	130
Esp3I	CGTCTC	2 cut(s)	313, 322
FaeI	CATG	2 cut(s)	223, 401
FaiI	YATR	2 cut(s)	221, 399
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	2 cut(s)	219, 397
Fnu4HI	GCNGC	7 cut(s)	45, 115, 254, 339, 444, 447, 457
FokI	GGATG	2 cut(s)	32, 518
Fsp4HI	GCNGC	7 cut(s)	45, 115, 254, 339, 444, 447, 457
FspBI	CTAG	2 cut(s)	50, 59
GlaI	GCGC	5 cut(s)	66, 113, 203, 230, 257
GluI	GCNGC	7 cut(s)	45, 115, 254, 339, 444, 447, 457
GsaI	CCCAGC	1 cut(s)	362
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	3 cut(s)	68, 205, 259
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	280
HhaI	GCGC	5 cut(s)	67, 114, 204, 231, 258
Hin1I	GRCGYC	2 cut(s)	202, 256
Hin1II	CATG	2 cut(s)	223, 401
Hin6I	GCGC	5 cut(s)	65, 112, 202, 229, 256
HinP1I	GCGC	5 cut(s)	65, 112, 202, 229, 256
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	2 cut(s)	440, 512
Hpy188I	TCNGA	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	2 cut(s)	443, 459
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 210, 311
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	2 cut(s)	202, 256
Hsp92II	CATG	2 cut(s)	223, 401
HspAI	GCGC	5 cut(s)	65, 112, 202, 229, 256
KasI	GGCGCC	2 cut(s)	201, 255
Kzo9I	GATC	3 cut(s)	52, 73, 123
LmnI	GCTCC	2 cut(s)	87, 226
LpnPI	CCDG	6 cut(s)	98, 287, 293, 316, 344, 513
Lsp1109I	GCAGC	5 cut(s)	56, 126, 443, 455, 458
MaeI	CTAG	2 cut(s)	50, 59
MaeII	ACGT	1 cut(s)	462
MalI	GATC	3 cut(s)	54, 75, 125
MboI	GATC	3 cut(s)	52, 73, 123
MboII	GAAGA	6 cut(s)	22, 106, 109, 155, 188, 207
MflI	RGATCY	1 cut(s)	123
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	3 cut(s)	342, 363, 375
MluNI	TGGCCA	1 cut(s)	135
Mly113I	GGCGCC	2 cut(s)	202, 256
MmeI	TCCRAC	2 cut(s)	101, 232
MnlI	CCTC	9 cut(s)	55, 191, 215, 303, 398, 424, 496, 526, 531
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	1 cut(s)	374
MslI	CAYNNNNRTG	1 cut(s)	236
Msp20I	TGGCCA	1 cut(s)	135
MspA1I	CMGCKG	2 cut(s)	117, 253
MspI	CCGG	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	64, 210, 311
NarI	GGCGCC	2 cut(s)	202, 256
NdeII	GATC	3 cut(s)	52, 73, 123
NlaIII	CATG	2 cut(s)	223, 401
NlaIV	GGNNCC	3 cut(s)	203, 243, 257
NspI	RCATGY	1 cut(s)	401
PciI	ACATGT	1 cut(s)	397
PctI	GAATGC	1 cut(s)	84
PkrI	GCNGC	7 cut(s)	46, 116, 255, 340, 445, 448, 458
PluTI	GGCGCC	2 cut(s)	205, 259
PscI	ACATGT	1 cut(s)	397
PshBI	ATTAAT	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	358
PspN4I	GGNNCC	3 cut(s)	203, 243, 257
PsuI	RGATCY	1 cut(s)	123
PvuII	CAGCTG	1 cut(s)	117
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	7 cut(s)	45, 115, 254, 339, 444, 447, 457
Sau3AI	GATC	3 cut(s)	52, 73, 123
SetI	ASST	7 cut(s)	30, 119, 157, 276, 326, 350, 465
SfcI	CTRYAG	1 cut(s)	248
SfoI	GGCGCC	2 cut(s)	203, 257
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	3 cut(s)	342, 363, 375
SsiI	CCGC	5 cut(s)	253, 312, 338, 426, 489
SspDI	GGCGCC	2 cut(s)	201, 255
SspMI	CTAG	2 cut(s)	50, 59
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	2 cut(s)	30, 76
TasI	AATT	3 cut(s)	342, 363, 375
TauI	GCSGC	2 cut(s)	256, 341
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TseI	GCWGC	5 cut(s)	44, 114, 443, 446, 456
TspDTI	ATGAA	2 cut(s)	107, 522
TspGWI	ACGGA	2 cut(s)	119, 239
VspI	ATTAAT	1 cut(s)	374
XceI	RCATGY	1 cut(s)	401
XspI	CTAG	2 cut(s)	50, 59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.