Rh1BG321500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000840
Physical Location & Seq
Reverse (-)
45468031 .. 45470465
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG321500.1

Sequence Viewer

Length: 315 bp
ATGACCGGCCATAGAAACGAAGACTTTCACGCTAACGACGAGATCGACGGCGTCGATCGCATTTCCGATCGGTCAAACGCCGAGGAATTCGAGGACTCGTCGGCTGCGAACGAGGTCGGGAGCTCCGGCGAGGGAGCTACGTCGTCGGGGAGTGAGATTGGGCTGGAAGAGCGGTTGACAGGGATACTGGTTGAAGGAGGGGACGGAGATCTGTTGCTGCAGCAGAGCAACCGAGAGGACCGGGTTTTGCAGTGGCTTCAAGCGCTTGATATGCAGAAAAGAAACATATGTCTGAAATGGTGTTGTTTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.45

Weight (kDa)

4.28

Isoelectric Point (pI)

61.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 172
AciI CCGC 1 cut(s) 172
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 51
AfeI AGCGCT 1 cut(s) 264
AgsI TTSAA 2 cut(s) 194, 260
AluBI AGCT 2 cut(s) 123, 137
AluI AGCT 2 cut(s) 123, 137
Alw21I GWGCWC 1 cut(s) 125
Aor51HI AGCGCT 1 cut(s) 264
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 3 cut(s) 104, 217, 220
ApoI RAATTY 1 cut(s) 86
Asp700I GAANNNNTTC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 3 cut(s) 91, 204, 232
BceAI ACGGC 1 cut(s) 64
BciVI GTATCC 1 cut(s) 177
BcnI CCSGG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 218
BfoI RGCGCY 1 cut(s) 266
BfuI GTATCC 1 cut(s) 177
BglII AGATCT 1 cut(s) 208
BisI GCNGC 3 cut(s) 105, 218, 221
BlsI GCNGC 3 cut(s) 106, 219, 222
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 81
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 192
BseXI GCAGC 3 cut(s) 91, 204, 232
Bsh1285I CGRYCG 2 cut(s) 58, 70
BshFI GGCC 1 cut(s) 9
BsiEI CGRYCG 2 cut(s) 58, 70
BsiHKAI GWGCWC 1 cut(s) 125
BsiSI CCGG 3 cut(s) 6, 126, 241
BslFI GGGAC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 4 cut(s) 42, 55, 67, 208
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 9
BspMAI CTGCAG 1 cut(s) 222
BspQI GCTCTTC 1 cut(s) 162
BsrBI CCGCTC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 4 cut(s) 42, 55, 67, 208
BssNI GRCGYC 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 4 cut(s) 45, 58, 70, 211
BstMBI GATC 4 cut(s) 42, 55, 67, 208
BstMCI CGRYCG 2 cut(s) 58, 70
BstMWI GCNNNNNNNGC 4 cut(s) 57, 169, 262, 271
BstSCI CCNGG 1 cut(s) 240
BstSFI CTRYAG 1 cut(s) 218
BstV1I GCAGC 3 cut(s) 91, 204, 232
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 9
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 257
CfoI GCGC 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 238
CseI GACGC 1 cut(s) 40
CviJI RGCY 6 cut(s) 9, 104, 123, 137, 163, 256
CviKI_1 RGCY 6 cut(s) 9, 104, 123, 137, 163, 256
DpnI GATC 4 cut(s) 44, 57, 69, 210
DpnII GATC 4 cut(s) 42, 55, 67, 208
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 238
Eco47III AGCGCT 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 125
FaiI YATR 5 cut(s) 12, 272, 287, 289, 313
FaqI GGGAC 1 cut(s) 215
FauNDI CATATG 1 cut(s) 287
Fnu4HI GCNGC 3 cut(s) 105, 218, 221
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 3 cut(s) 105, 218, 221
GlaI GCGC 1 cut(s) 264
GluI GCNGC 3 cut(s) 105, 218, 221
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 1 cut(s) 9
HapII CCGG 3 cut(s) 6, 126, 241
HgaI GACGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 51
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HinfI GANTC 1 cut(s) 95
HpaII CCGG 3 cut(s) 6, 126, 241
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 2 cut(s) 67, 294
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 177
Hpy99I CGWCG 6 cut(s) 41, 50, 56, 103, 145, 148
HpyAV CCTTC 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 3 cut(s) 220, 250, 274
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 169, 262, 271
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 51
HspAI GCGC 1 cut(s) 263
Kzo9I GATC 4 cut(s) 42, 55, 67, 208
LguI GCTCTTC 1 cut(s) 162
LmnI GCTCC 3 cut(s) 120, 128, 134
LpnPI CCDG 6 cut(s) 19, 139, 149, 165, 173, 254
Lsp1109I GCAGC 3 cut(s) 91, 204, 232
MaeII ACGT 1 cut(s) 140
MalI GATC 4 cut(s) 44, 57, 69, 210
MbiI CCGCTC 1 cut(s) 172
MboI GATC 4 cut(s) 42, 55, 67, 208
MboII GAAGA 2 cut(s) 32, 179
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 1 cut(s) 86
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 6 cut(s) 76, 85, 106, 124, 191, 229
MroXI GAANNNNTTC 1 cut(s) 24
MspI CCGG 3 cut(s) 6, 126, 241
MspR9I CCNGG 1 cut(s) 242
MwoI GCNNNNNNNGC 4 cut(s) 57, 169, 262, 271
NciI CCSGG 1 cut(s) 242
NdeI CATATG 1 cut(s) 287
NdeII GATC 4 cut(s) 42, 55, 67, 208
NmeAIII GCCGAG 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 162
PcsI WCGNNNNNNNCGW 4 cut(s) 36, 42, 51, 104
PdmI GAANNNNTTC 1 cut(s) 24
PflFI GACNNNGTC 1 cut(s) 50
PkrI GCNGC 3 cut(s) 106, 219, 222
Ple19I CGATCG 2 cut(s) 58, 70
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 238
PstI CTGCAG 1 cut(s) 222
PsuI RGATCY 1 cut(s) 208
PsyI GACNNNGTC 1 cut(s) 50
PvuI CGATCG 2 cut(s) 58, 70
SacI GAGCTC 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 162
SatI GCNGC 3 cut(s) 105, 218, 221
Sau3AI GATC 4 cut(s) 42, 55, 67, 208
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 125
SetI ASST 4 cut(s) 117, 125, 139, 143
SfcI CTRYAG 1 cut(s) 218
SinI GGWCC 1 cut(s) 238
Sse9I AATT 1 cut(s) 86
SsiI CCGC 1 cut(s) 172
SstI GAGCTC 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 240
TaiI ACGT 1 cut(s) 143
TaqI TCGA 3 cut(s) 45, 54, 90
TaqII GACCGA 1 cut(s) 60
TasI AATT 1 cut(s) 86
TscAI CASTG 1 cut(s) 257
TseI GCWGC 3 cut(s) 104, 217, 220
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 257
Tth111I GACNNNGTC 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.