Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Reverse (-)

13081719 .. 13082205

Gene Structure 487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG072100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCTGCCTGCGAATTCGCTCTCCTCCGGATTCCAATTCCATTATTATCTTCAACAAAATCTCACCCAGATCAGCCTTCTTTCTCCCTCTCCCTCTCCTTATCTCAAATCTCATTTCCTTCATTTGAATCAAACTTTCTGCAAATCCATCAAATCCAACAATGGAGAACTGTCCAAGAGATAATTGAGCACCAAGTGTTGACGGTGGCGAAGACAGTGGAGGACAAGCTTGACGAGGAAATCGCAGCCCTAGATCGGCTGGATGACGACGATCTAGAGGCGCTCAGAGATCGGATGCTCCAGCAGATGAAGAAGATGGCGGAGAAGCACAGCCGTTGGATCTCCCTTGGCCACGATGCGTACACGGATTCGGACCCGGCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

128

Amino Acids

14.66

Weight (kDa)

4.84

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	379
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	14
AdeI	CACNNNGTG	1 cut(s)	196
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	54, 128
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	347
Aor13HI	TCCGGA	1 cut(s)	27
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	373
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	2 cut(s)	156, 310
BceAI	ACGGC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	377
BfaI	CTAG	2 cut(s)	251, 275
BfoI	RGCGCY	1 cut(s)	284
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	2 cut(s)	375, 381
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	2 cut(s)	285, 346
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	346
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
BseAI	TCCGGA	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	2 cut(s)	268, 300
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	257
BshFI	GGCC	1 cut(s)	351
BshNI	GGYRCC	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	28, 377
BslI	CCNNNNNNNGG	1 cut(s)	255
BsnI	GGCC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp13I	TCCGGA	1 cut(s)	27
Bsp143I	GATC	5 cut(s)	70, 253, 271, 289, 339
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	297
BspEI	TCCGGA	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	375, 381
BspPI	GGATC	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	5 cut(s)	70, 253, 271, 289, 339
BssT1I	CCWWGG	1 cut(s)	346
Bst4CI	ACNGT	3 cut(s)	172, 205, 217
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	268, 300
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	5 cut(s)	73, 256, 274, 292, 342
BstMBI	GATC	5 cut(s)	70, 253, 271, 289, 339
BstSCI	CCNGG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	268, 300
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	361
CviJI	RGCY	6 cut(s)	76, 229, 248, 259, 333, 351
CviKI_1	RGCY	6 cut(s)	76, 229, 248, 259, 333, 351
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	5 cut(s)	72, 255, 273, 291, 341
DpnII	GATC	5 cut(s)	70, 253, 271, 289, 339
DraIII	CACNNNGTG	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	349
EciI	GGCGGA	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
FaiI	YATR	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	2 cut(s)	275, 307
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	2 cut(s)	251, 275
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	284
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	2 cut(s)	28, 377
HhaI	GCGC	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	3 cut(s)	31, 128, 368
HpaII	CCGG	2 cut(s)	28, 377
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	201, 363
Hpy188I	TCNGA	3 cut(s)	287, 294, 373
Hpy188III	TCNNGA	2 cut(s)	28, 275
Hpy8I	GTNNAC	2 cut(s)	201, 363
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	2 cut(s)	87, 129
HpyCH4III	ACNGT	3 cut(s)	172, 205, 217
HpyCH4V	TGCA	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	27
Kzo9I	GATC	5 cut(s)	70, 253, 271, 289, 339
LmnI	GCTCC	1 cut(s)	303
LpnPI	CCDG	5 cut(s)	22, 41, 81, 245, 314
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	2 cut(s)	285, 346
MaeI	CTAG	2 cut(s)	251, 275
MalI	GATC	5 cut(s)	72, 255, 273, 291, 341
MboI	GATC	5 cut(s)	70, 253, 271, 289, 339
MboII	GAAGA	4 cut(s)	42, 223, 322, 325
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	3 cut(s)	14, 36, 183
MluNI	TGGCCA	1 cut(s)	351
MmeI	TCCRAC	2 cut(s)	181, 317
MnlI	CCTC	6 cut(s)	35, 98, 104, 214, 229, 271
Mox20I	TGGCCA	1 cut(s)	351
MroI	TCCGGA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	351
MspI	CCGG	2 cut(s)	28, 377
MspR9I	CCNGG	1 cut(s)	377
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	5 cut(s)	70, 253, 271, 289, 339
NlaIV	GGNNCC	2 cut(s)	375, 381
PfeI	GAWTC	3 cut(s)	31, 128, 368
PkrI	GCNGC	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	375, 381
PspPI	GGNCC	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	339
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	5 cut(s)	70, 253, 271, 289, 339
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	1 cut(s)	231
SfaNI	GCATC	2 cut(s)	285, 346
SinI	GGWCC	1 cut(s)	373
Sse9I	AATT	3 cut(s)	14, 36, 183
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	2 cut(s)	251, 275
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	3 cut(s)	172, 205, 217
TasI	AATT	3 cut(s)	14, 36, 183
TfiI	GAWTC	3 cut(s)	31, 128, 368
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	111, 323
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	1 cut(s)	14
XbaI	TCTAGA	1 cut(s)	274
XspI	CTAG	2 cut(s)	251, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.