MD12G1168400.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
24883652 .. 24885494
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1168400.v1.1.491

Sequence Viewer

Length: 138 bp
ATGCTTGCTAGGTGCTTCTGTATACCTCTCGTATCTATTCGTGTGGGGAAGATCAACAAGCAAGGGACTCTCTTGTGTCCCACTGCTGCTAGCACTTCGCATGCATCATGTGTTTTCGCCCAACACGTGGGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

46

Amino Acids

4.73

Weight (kDa)

9.3

Isoelectric Point (pI)

18.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 127
AccI GTMKAC 1 cut(s) 22
AcvI CACGTG 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 86
AsuNHI GCTAGC 1 cut(s) 89
BbrPI CACGTG 1 cut(s) 127
BbvI GCAGC 1 cut(s) 73
BfaI CTAG 2 cut(s) 9, 90
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmsI GCATC 1 cut(s) 113
BmtI GCTAGC 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 73
BslFI GGGAC 2 cut(s) 63, 79
BslI CCNNNNNNNGG 1 cut(s) 127
BsmFI GGGAC 2 cut(s) 63, 79
Bsp143I GATC 1 cut(s) 51
BspOI GCTAGC 1 cut(s) 93
BssMI GATC 1 cut(s) 51
BssNAI GTATAC 1 cut(s) 23
Bst1107I GTATAC 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 3 cut(s) 6, 91, 102
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 73
BstZ17I GTATAC 1 cut(s) 23
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 3 cut(s) 6, 91, 102
CviAII CATG 3 cut(s) 101, 108, 135
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
Eco72I CACGTG 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 106
FaeI CATG 3 cut(s) 104, 111, 138
FaiI YATR 4 cut(s) 23, 102, 109, 136
FaqI GGGAC 2 cut(s) 63, 79
FatI CATG 3 cut(s) 100, 107, 134
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 2 cut(s) 9, 90
GluI GCNGC 1 cut(s) 87
Hin1II CATG 3 cut(s) 104, 111, 138
HinfI GANTC 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 3 cut(s) 104, 111, 138
Kzo9I GATC 1 cut(s) 51
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 113
MaeI CTAG 2 cut(s) 9, 90
MaeII ACGT 1 cut(s) 126
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 1 cut(s) 61
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 1 cut(s) 36
Mph1103I ATGCAT 1 cut(s) 106
NdeII GATC 1 cut(s) 51
NheI GCTAGC 1 cut(s) 89
NlaIII CATG 3 cut(s) 104, 111, 138
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 104
PaeI GCATGC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 127
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 61
PmaCI CACGTG 1 cut(s) 127
PmlI CACGTG 1 cut(s) 127
PpsI GAGTC 1 cut(s) 61
Ppu21I YACGTR 1 cut(s) 127
PspCI CACGTG 1 cut(s) 127
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 51
SchI GAGTC 1 cut(s) 61
SetI ASST 3 cut(s) 14, 28, 129
SfaNI GCATC 1 cut(s) 113
SphI GCATGC 1 cut(s) 104
SspMI CTAG 2 cut(s) 9, 90
TaiI ACGT 1 cut(s) 129
TscAI CASTG 1 cut(s) 88
TseI GCWGC 1 cut(s) 86
TspRI CASTG 1 cut(s) 88
Van91I CCANNNNNTGG 1 cut(s) 127
XceI RCATGY 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 2 cut(s) 9, 90
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.