Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Reverse (-)

29153872 .. 29155029

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1214200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACTAACCATGGGGTCCGAGATTTACACACGAACGATGAGATCGATTGCGTTGGGGATCAATCGAACGGTGGGGAATTGGAGAACTCGTCGGCTTCGAACGGTGTGGGGGGCTCCGGCGCTGGACCGGCGTCGAGGAGTGAGACTGGGCTTGAGGAGCGGTTGACGGGGATACTTGTTGACGAAGGAGATGGAGATCTGTTGCTCCAGCAGAGCAATCGGGAGGACCGCGTTTTGCAGTGGCTAGAAGCGCTTGATATGCAGGTTATGGGCGCGTGTCGCGCCGACGAGAGGTTGAAGCCGCTGTTGAAGATGAACGCCTCGAATGACGTCGCAGAGGATCGATTGTTAGCTCAATTGAGCCAGCATTTCGAGCCAGCGGAAGTTGGAATGCTAGCGAGGTGCTTTTGTATACCTCTCGTTTCTATTCGTGTGGGGAAGATAAACAAGCAAGGGACTCTCTTGTGCCCTACTGCTGCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.3

Weight (kDa)

4.68

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	333
Acc36I	ACCTGC	1 cut(s)	253
AccBSI	CCGCTC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	412
AccII	CGCG	3 cut(s)	231, 275, 282
AciI	CCGC	4 cut(s)	160, 229, 302, 380
AclWI	GGATC	2 cut(s)	66, 348
AcyI	GRCGYC	2 cut(s)	131, 330
AfeI	AGCGCT	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	2 cut(s)	298, 310
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	66, 348
Aor51HI	AGCGCT	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	476
AspLEI	GCGC	4 cut(s)	122, 253, 275, 284
AspS9I	GGNCC	3 cut(s)	16, 125, 226
AsuII	TTCGAA	1 cut(s)	98
AsuNHI	GCTAGC	1 cut(s)	394
AvaII	GGWCC	3 cut(s)	16, 125, 226
BaeGI	GKGCMC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciVI	GTATCC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	3 cut(s)	245, 395, 480
BfoI	RGCGCY	2 cut(s)	123, 254
BfuAI	ACCTGC	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	165
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	2 cut(s)	302, 477
BlsI	GCNGC	2 cut(s)	303, 478
Bme18I	GGWCC	3 cut(s)	16, 125, 226
BmgT120I	GGNCC	3 cut(s)	16, 125, 226
BmiI	GGNNCC	2 cut(s)	17, 115
BmrI	ACTGGG	1 cut(s)	156
BmtI	GCTAGC	1 cut(s)	398
BmuI	ACTGGG	1 cut(s)	156
BoxI	GACNNNNGTC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	173
Bsa29I	ATCGAT	2 cut(s)	45, 343
BsaBI	GATNNNNATC	1 cut(s)	195
BsaHI	GRCGYC	2 cut(s)	131, 330
BsaJI	CCNNGG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	195
BseCI	ATCGAT	2 cut(s)	45, 343
BseDI	CCNNGG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	2 cut(s)	151, 170
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	463
Bsh1236I	CGCG	3 cut(s)	231, 275, 282
BshVI	ATCGAT	2 cut(s)	45, 343
BsiSI	CCGG	2 cut(s)	117, 128
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	396
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	116, 470
Bsp143I	GATC	4 cut(s)	42, 58, 196, 340
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	4 cut(s)	160, 229, 302, 380
BspDI	ATCGAT	2 cut(s)	45, 343
BspFNI	CGCG	3 cut(s)	231, 275, 282
BspLI	GGNNCC	2 cut(s)	17, 115
BspMI	ACCTGC	1 cut(s)	253
BspOI	GCTAGC	1 cut(s)	398
BspPI	GGATC	2 cut(s)	66, 348
BspT104I	TTCGAA	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	160
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	4 cut(s)	42, 58, 196, 340
BssNAI	GTATAC	1 cut(s)	413
BssNI	GRCGYC	2 cut(s)	131, 330
BssT1I	CCWWGG	1 cut(s)	10
Bst1107I	GTATAC	1 cut(s)	413
Bst4CI	ACNGT	2 cut(s)	71, 104
BstACI	GRCGYC	2 cut(s)	131, 330
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	365, 378, 396
BstDSI	CCRYGG	1 cut(s)	10
BstFNI	CGCG	3 cut(s)	231, 275, 282
BstH2I	RGCGCY	2 cut(s)	123, 254
BstHHI	GCGC	4 cut(s)	122, 253, 275, 284
BstKTI	GATC	4 cut(s)	45, 61, 199, 343
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	4 cut(s)	42, 58, 196, 340
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 157, 250, 259, 279, 281, 373
BstPAI	GACNNNNGTC	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	470
BstUI	CGCG	3 cut(s)	231, 275, 282
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BstZ17I	GTATAC	1 cut(s)	413
Bsu15I	ATCGAT	2 cut(s)	45, 343
BsuI	GTATCC	1 cut(s)	165
BsuTUI	ATCGAT	2 cut(s)	45, 343
BtgI	CCRYGG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	245
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	3 cut(s)	365, 378, 396
CfoI	GCGC	4 cut(s)	122, 253, 275, 284
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	3 cut(s)	16, 125, 226
ClaI	ATCGAT	2 cut(s)	45, 343
CseI	GACGC	1 cut(s)	120
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	8 cut(s)	95, 114, 151, 244, 301, 353, 363, 376
CviKI_1	RGCY	8 cut(s)	95, 114, 151, 244, 301, 353, 363, 376
DpnI	GATC	4 cut(s)	44, 60, 198, 342
DpnII	GATC	4 cut(s)	42, 58, 196, 340
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	3 cut(s)	16, 125, 226
Eco47III	AGCGCT	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	1 cut(s)	14
FaiI	YATR	4 cut(s)	12, 260, 269, 413
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	302, 477
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	302, 477
FspBI	CTAG	3 cut(s)	245, 395, 480
GlaI	GCGC	4 cut(s)	121, 252, 274, 283
GluI	GCNGC	2 cut(s)	302, 477
GsuI	CTGGAG	1 cut(s)	191
HaeII	RGCGCY	2 cut(s)	123, 254
HapII	CCGG	2 cut(s)	117, 128
HgaI	GACGC	1 cut(s)	120
HhaI	GCGC	4 cut(s)	122, 253, 275, 284
Hin1I	GRCGYC	2 cut(s)	131, 330
Hin1II	CATG	1 cut(s)	14
Hin6I	GCGC	4 cut(s)	120, 251, 273, 282
HinP1I	GCGC	4 cut(s)	120, 251, 273, 282
HincII	GTYRAC	2 cut(s)	165, 181
HindII	GTYRAC	2 cut(s)	165, 181
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	117, 128
Hpy166II	GTNNAC	3 cut(s)	165, 181, 413
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	3 cut(s)	165, 181, 413
Hpy99I	CGWCG	4 cut(s)	94, 136, 290, 335
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	71, 104
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	2 cut(s)	238, 262
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 157, 250, 259, 279, 281, 373
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	2 cut(s)	131, 330
Hsp92II	CATG	1 cut(s)	14
HspAI	GCGC	4 cut(s)	120, 251, 273, 282
Kzo9I	GATC	4 cut(s)	42, 58, 196, 340
LmnI	GCTCC	3 cut(s)	119, 157, 210
LpnPI	CCDG	8 cut(s)	108, 130, 132, 141, 221, 248, 377, 390
Lsp1109I	GCAGC	1 cut(s)	463
MaeI	CTAG	3 cut(s)	245, 395, 480
MaeII	ACGT	1 cut(s)	330
MalI	GATC	4 cut(s)	44, 60, 198, 342
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	4 cut(s)	42, 58, 196, 340
MboII	GAAGA	2 cut(s)	322, 451
MfeI	CAATTG	1 cut(s)	356
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	116, 470
MluCI	AATT	2 cut(s)	77, 356
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	8 cut(s)	129, 148, 217, 285, 331, 331, 393, 426
MspA1I	CMGCKG	2 cut(s)	304, 380
MspI	CCGG	2 cut(s)	117, 128
MunI	CAATTG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	396
MvnI	CGCG	3 cut(s)	231, 275, 282
MwoI	GCNNNNNNNGC	7 cut(s)	128, 157, 250, 259, 279, 281, 373
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	4 cut(s)	42, 58, 196, 340
NheI	GCTAGC	1 cut(s)	394
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	2 cut(s)	17, 115
NspV	TTCGAA	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 95
PctI	GAATGC	1 cut(s)	396
PkrI	GCNGC	2 cut(s)	303, 478
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PshAI	GACNNNNGTC	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	17, 115
PspPI	GGNCC	3 cut(s)	16, 125, 226
PsuI	RGATCY	1 cut(s)	196
SatI	GCNGC	2 cut(s)	302, 477
Sau3AI	GATC	4 cut(s)	42, 58, 196, 340
Sau96I	GGNCC	3 cut(s)	16, 125, 226
SchI	GAGTC	1 cut(s)	451
SduI	GDGCHC	2 cut(s)	116, 470
SetI	ASST	7 cut(s)	267, 296, 333, 355, 404, 418, 485
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	3 cut(s)	16, 125, 226
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	77, 356
SsiI	CCGC	4 cut(s)	160, 229, 302, 380
SspMI	CTAG	3 cut(s)	245, 395, 480
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	2 cut(s)	71, 104
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	7 cut(s)	45, 65, 98, 134, 323, 343, 372
TasI	AATT	2 cut(s)	77, 356
TauI	GCSGC	1 cut(s)	304
TscAI	CASTG	1 cut(s)	245
TseI	GCWGC	1 cut(s)	476
TspDTI	ATGAA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	245
VpaK11BI	GGWCC	3 cut(s)	16, 125, 226
XmiI	GTMKAC	1 cut(s)	412
XspI	CTAG	3 cut(s)	245, 395, 480
ZraI	GACGTC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.