Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004498.1

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

54765 .. 56025

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004498.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgtctgcttgcgaattcgctcccctccggattccaattccattgccatcttcaacaaaatctcacccagatcaaccttctttctccctctccctctccttctctcaaatctcatttccttcatttgaatcaaactttctgcatatccatctaatccaacaatggcgaactgtccaagagataattgagcagcaagtgttgatggtggcgaagacggtggatgacaagctcgacgaggaaatcgcagccctagatcggctggaggcgcacagagatcgaatgctccagcagatcaagaagatggcggagaagcgcagctgttggatctcccttggccacggcgaagagagagtacctttgtttagagaaaggagagaagagaagcagagattgagaagaggggcgcctccaaccccaaaccatgacgaagcgcacaaaaatggcgccactacagcggcgccgccaccactaccacctgtttcgatgatgggtgttctgcttagagatttgaagcttggagatgatggtgttctgcttcacattgatttagttgcaggaaagcgggacatgtgggaggaagtgttggtagtagtggcggtgagggggggtgttgcagcagcctttggctgcaacgtcggtagtgatgatggtggaagtggcagtggcaatggtgaggatgaagtgctgtggcgatgggcaggggaggggaggagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

238

Amino Acids

26.47

Weight (kDa)

5.92

Isoelectric Point (pI)

62.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	403, 443, 457
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	5 cut(s)	305, 455, 461, 562, 596
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	14
AcyI	GRCGYC	3 cut(s)	404, 444, 458
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	255
AflIII	ACRYGT	1 cut(s)	567
AgsI	TTSAA	3 cut(s)	54, 128, 511
AluBI	AGCT	3 cut(s)	229, 318, 514
AluI	AGCT	3 cut(s)	229, 318, 514
AlwI	GGATC	1 cut(s)	332
Aor13HI	TCCGGA	1 cut(s)	27
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	6 cut(s)	190, 245, 315, 614, 617, 627
ApoI	RAATTY	1 cut(s)	14
AspLEI	GCGC	6 cut(s)	268, 315, 406, 433, 446, 460
AsuHPI	GGTGA	3 cut(s)	56, 610, 683
BalI	TGGCCA	1 cut(s)	336
BanI	GGYRCC	3 cut(s)	403, 443, 457
BarI	GAAGNNNNNNTAC	2 cut(s)	336, 368
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	6 cut(s)	202, 257, 327, 614, 626, 629
BccI	CCATC	8 cut(s)	55, 156, 196, 295, 481, 518, 641, 687
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	3 cut(s)	407, 447, 461
BisI	GCNGC	8 cut(s)	191, 246, 316, 456, 461, 615, 618, 628
BlsI	GCNGC	8 cut(s)	192, 247, 317, 457, 462, 616, 619, 629
BmiI	GGNNCC	3 cut(s)	405, 445, 459
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	2 cut(s)	269, 281
BsaHI	GRCGYC	3 cut(s)	404, 444, 458
BsaJI	CCNNGG	2 cut(s)	331, 337
BsaWI	WCCGGW	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse3DI	GCAATG	2 cut(s)	41, 673
BseAI	TCCGGA	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	331, 337
BseGI	GGATG	2 cut(s)	226, 682
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMI	GCAATG	2 cut(s)	41, 673
BseXI	GCAGC	6 cut(s)	202, 257, 327, 614, 626, 629
BshFI	GGCC	1 cut(s)	336
BshNI	GGYRCC	3 cut(s)	403, 443, 457
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	578
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	27
Bsp143I	GATC	5 cut(s)	70, 253, 274, 291, 324
BspACI	CCGC	5 cut(s)	305, 455, 461, 562, 596
BspANI	GGCC	1 cut(s)	336
BspEI	TCCGGA	1 cut(s)	27
BspLI	GGNNCC	3 cut(s)	405, 445, 459
BspPI	GGATC	1 cut(s)	332
BspT107I	GGYRCC	3 cut(s)	403, 443, 457
BsrDI	GCAATG	2 cut(s)	41, 673
BssECI	CCNNGG	2 cut(s)	331, 337
BssMI	GATC	5 cut(s)	70, 253, 274, 291, 324
BssNI	GRCGYC	3 cut(s)	404, 444, 458
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	172, 217
Bst6I	CTCTTC	3 cut(s)	339, 372, 391
BstACI	GRCGYC	3 cut(s)	404, 444, 458
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	500
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	2 cut(s)	226, 682
BstH2I	RGCGCY	3 cut(s)	407, 447, 461
BstHHI	GCGC	6 cut(s)	268, 315, 406, 433, 446, 460
BstKTI	GATC	5 cut(s)	73, 256, 277, 294, 327
BstMBI	GATC	5 cut(s)	70, 253, 274, 291, 324
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 452
BstNSI	RCATGY	1 cut(s)	571
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	6 cut(s)	202, 257, 327, 614, 626, 629
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	337
BtgZI	GCGATG	1 cut(s)	706
BtsCI	GGATG	2 cut(s)	226, 682
BtsI	GCAGTG	1 cut(s)	667
BtsIMutI	CAGTG	1 cut(s)	667
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	6 cut(s)	268, 315, 406, 433, 446, 460
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	2 cut(s)	422, 568
CviJI	RGCY	8 cut(s)	229, 248, 259, 318, 336, 514, 620, 627
CviKI_1	RGCY	8 cut(s)	229, 248, 259, 318, 336, 514, 620, 627
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	1 cut(s)	500
DinI	GGCGCC	3 cut(s)	405, 445, 459
DpnI	GATC	5 cut(s)	72, 255, 276, 293, 326
DpnII	GATC	5 cut(s)	70, 253, 274, 291, 324
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	3 cut(s)	339, 372, 391
EarI	CTCTTC	3 cut(s)	339, 372, 391
EciI	GGCGGA	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	331
EgeI	GGCGCC	3 cut(s)	405, 445, 459
EheI	GGCGCC	3 cut(s)	405, 445, 459
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	2 cut(s)	425, 571
FaiI	YATR	3 cut(s)	144, 423, 569
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	2 cut(s)	421, 567
FauI	CCCGC	1 cut(s)	555
Fnu4HI	GCNGC	8 cut(s)	191, 246, 316, 456, 461, 615, 618, 628
FokI	GGATG	2 cut(s)	233, 689
Fsp4HI	GCNGC	8 cut(s)	191, 246, 316, 456, 461, 615, 618, 628
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	6 cut(s)	267, 314, 405, 432, 445, 459
GluI	GCNGC	8 cut(s)	191, 246, 316, 456, 461, 615, 618, 628
GsuI	CTGGAG	2 cut(s)	269, 281
HaeII	RGCGCY	3 cut(s)	407, 447, 461
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	1 cut(s)	28
HhaI	GCGC	6 cut(s)	268, 315, 406, 433, 446, 460
Hin1I	GRCGYC	3 cut(s)	404, 444, 458
Hin1II	CATG	2 cut(s)	425, 571
Hin6I	GCGC	6 cut(s)	266, 313, 404, 431, 444, 458
HinP1I	GCGC	6 cut(s)	266, 313, 404, 431, 444, 458
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	2 cut(s)	31, 128
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	3 cut(s)	56, 610, 683
Hpy188III	TCNNGA	2 cut(s)	28, 295
Hpy99I	CGWCG	2 cut(s)	236, 638
HpyAV	CCTTC	3 cut(s)	87, 109, 129
HpyCH4III	ACNGT	2 cut(s)	172, 217
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	4 cut(s)	142, 554, 614, 630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 452
HpyF3I	CTNAG	1 cut(s)	500
HpySE526I	ACGT	1 cut(s)	633
Hsp92I	GRCGYC	3 cut(s)	404, 444, 458
Hsp92II	CATG	2 cut(s)	425, 571
HspAI	GCGC	6 cut(s)	266, 313, 404, 431, 444, 458
KasI	GGCGCC	3 cut(s)	403, 443, 457
Kpn2I	TCCGGA	1 cut(s)	27
Kzo9I	GATC	5 cut(s)	70, 253, 274, 291, 324
LmnI	GCTCC	2 cut(s)	25, 288
LpnPI	CCDG	7 cut(s)	41, 81, 245, 299, 489, 540, 684
Lsp1109I	GCAGC	6 cut(s)	202, 257, 327, 614, 626, 629
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	633
MalI	GATC	5 cut(s)	72, 255, 276, 293, 326
MboI	GATC	5 cut(s)	70, 253, 274, 291, 324
MboII	GAAGA	6 cut(s)	42, 223, 310, 356, 389, 408
MflI	RGATCY	1 cut(s)	324
MlsI	TGGCCA	1 cut(s)	336
MluCI	AATT	3 cut(s)	14, 36, 183
MluNI	TGGCCA	1 cut(s)	336
Mly113I	GGCGCC	3 cut(s)	404, 444, 458
MmeI	TCCRAC	3 cut(s)	181, 302, 434
Mox20I	TGGCCA	1 cut(s)	336
MroI	TCCGGA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	336
MspA1I	CMGCKG	2 cut(s)	318, 455
MspI	CCGG	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	265, 452
NarI	GGCGCC	3 cut(s)	404, 444, 458
NdeII	GATC	5 cut(s)	70, 253, 274, 291, 324
NlaIII	CATG	2 cut(s)	425, 571
NlaIV	GGNNCC	3 cut(s)	405, 445, 459
NspI	RCATGY	1 cut(s)	571
PciI	ACATGT	1 cut(s)	567
PctI	GAATGC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	31, 128
PkrI	GCNGC	8 cut(s)	192, 247, 317, 457, 462, 616, 619, 629
PluTI	GGCGCC	3 cut(s)	407, 447, 461
PscI	ACATGT	1 cut(s)	567
PspN4I	GGNNCC	3 cut(s)	405, 445, 459
PsuI	RGATCY	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	318
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	438
SatI	GCNGC	8 cut(s)	191, 246, 316, 456, 461, 615, 618, 628
Sau3AI	GATC	5 cut(s)	70, 253, 274, 291, 324
SetI	ASST	7 cut(s)	79, 231, 320, 358, 478, 516, 636
SfcI	CTRYAG	1 cut(s)	450
SfoI	GGCGCC	3 cut(s)	405, 445, 459
SmiMI	CAYNNNNRTG	1 cut(s)	438
Sse9I	AATT	3 cut(s)	14, 36, 183
SsiI	CCGC	5 cut(s)	305, 455, 461, 562, 596
SspDI	GGCGCC	3 cut(s)	403, 443, 457
SspMI	CTAG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	172, 217
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	3 cut(s)	231, 277, 482
TasI	AATT	3 cut(s)	14, 36, 183
TauI	GCSGC	2 cut(s)	458, 463
TfiI	GAWTC	2 cut(s)	31, 128
TscAI	CASTG	1 cut(s)	667
TseI	GCWGC	6 cut(s)	190, 245, 315, 614, 617, 627
TspDTI	ATGAA	2 cut(s)	111, 693
TspRI	CASTG	1 cut(s)	667
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	1 cut(s)	571
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.