Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003338.1

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Reverse (-)

69352 .. 72822

Gene Structure 3471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003338.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgggatcactgaagcccatccgcctttatggcgctggttactgtctttatggcagtaatgctgaagcccatacgacctactgtccaccttcccaattgccgctggcatcagaacttccacccctgtctacctgcgaatttgctcccttccagattccaattccattgccatcttcaacaaaatctcacctagatcatccctctttctccctccccctctccttctctcaaatctcatttccttcatttgaatcaaactttctgcaaatccatctaatccaacaatggcgaactgtccaagagataattgagcagcaagtgttgacggttgcgaagacggtggaggacaagctctacgaggaaattacagccctagatcggctggatgacggtgatctggaggagctcagagatcggatgctccagcggatgaagaagatggcagagaagagcagccattggatctcccttggtcacggcaagtacatggaaaaaggacatgtgggaggaagtgttggtagtagtggcggtgaggggggtgttgctgcagcctttggctgcaacgtgggtagtgatggtggtggaagtggtggtagcaatggcttggatgaagtgctatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

207

Amino Acids

22.44

Weight (kDa)

5.18

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	128
AciI	CCGC	4 cut(s)	22, 101, 427, 528
AclWI	GGATC	2 cut(s)	13, 470
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	2 cut(s)	32, 84
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	378
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	2 cut(s)	177, 251
AhdI	GACNNNNNGTC	1 cut(s)	81
AluBI	AGCT	2 cut(s)	352, 406
AluI	AGCT	2 cut(s)	352, 406
Alw21I	GWGCWC	1 cut(s)	408
AlwI	GGATC	2 cut(s)	13, 470
ApeKI	GCWGC	5 cut(s)	313, 453, 545, 548, 558
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	35
AsuHPI	GGTGA	3 cut(s)	179, 404, 542
BanII	GRGCYC	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	5 cut(s)	325, 465, 532, 545, 560
BccI	CCATC	5 cut(s)	26, 178, 279, 433, 569
BceAI	ACGGC	1 cut(s)	493
BfaI	CTAG	2 cut(s)	191, 374
BfmI	CTRYAG	1 cut(s)	546
BfoI	RGCGCY	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	140
BglI	GCCNNNNNGGC	1 cut(s)	30
BisI	GCNGC	6 cut(s)	101, 314, 454, 546, 549, 559
BlsI	GCNGC	6 cut(s)	102, 315, 455, 547, 550, 560
BmeRI	GACNNNNNGTC	1 cut(s)	81
BmsI	GCATC	2 cut(s)	116, 408
BpiI	GAAGAC	1 cut(s)	341
BpmI	CTGGAG	2 cut(s)	407, 419
BsaJI	CCNNGG	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse3DI	GCAATG	2 cut(s)	164, 604
BseDI	CCNNGG	1 cut(s)	469
BseGI	GGATG	6 cut(s)	18, 196, 391, 423, 435, 613
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMI	GCAATG	2 cut(s)	164, 604
BseMII	CTCAG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	5 cut(s)	325, 465, 532, 545, 560
BsiHKAI	GWGCWC	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	6 cut(s)	5, 193, 376, 394, 412, 462
BspACI	CCGC	4 cut(s)	22, 101, 427, 528
BspCNI	CTCAG	1 cut(s)	420
BspMAI	CTGCAG	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	2 cut(s)	13, 470
BspQI	GCTCTTC	1 cut(s)	443
BsrDI	GCAATG	2 cut(s)	164, 604
BssECI	CCNNGG	1 cut(s)	469
BssMI	GATC	6 cut(s)	5, 193, 376, 394, 412, 462
BssT1I	CCWWGG	1 cut(s)	469
Bst4CI	ACNGT	6 cut(s)	44, 83, 295, 328, 340, 392
Bst6I	CTCTTC	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	407
BstF5I	GGATG	6 cut(s)	18, 196, 391, 423, 435, 613
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	6 cut(s)	8, 196, 379, 397, 415, 465
BstMBI	GATC	6 cut(s)	5, 193, 376, 394, 412, 462
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	503
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	5 cut(s)	325, 465, 532, 545, 560
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
BtsCI	GGATG	6 cut(s)	18, 196, 391, 423, 435, 613
BtsIMutI	CAGTG	1 cut(s)	8
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	2 cut(s)	487, 500
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	6 cut(s)	7, 195, 378, 396, 414, 464
DpnII	GATC	6 cut(s)	5, 193, 376, 394, 412, 462
DriI	GACNNNNNGTC	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	443
Eam1105I	GACNNNNNGTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	443
EciI	GGCGGA	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	408
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	2 cut(s)	32, 84
EcoICRI	GAGCTC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	2 cut(s)	490, 503
FaiI	YATR	6 cut(s)	30, 51, 72, 488, 501, 619
FatI	CATG	2 cut(s)	486, 499
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	6 cut(s)	101, 314, 454, 546, 549, 559
FokI	GGATG	6 cut(s)	5, 183, 398, 430, 442, 620
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	6 cut(s)	101, 314, 454, 546, 549, 559
FspBI	CTAG	2 cut(s)	191, 374
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	6 cut(s)	101, 314, 454, 546, 549, 559
GsuI	CTGGAG	2 cut(s)	407, 419
HaeII	RGCGCY	1 cut(s)	36
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	490, 503
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HinfI	GANTC	2 cut(s)	154, 251
HphI	GGTGA	3 cut(s)	179, 404, 542
Hpy166II	GTNNAC	3 cut(s)	86, 129, 324
Hpy188I	TCNGA	3 cut(s)	112, 410, 417
Hpy188III	TCNNGA	2 cut(s)	151, 398
Hpy8I	GTNNAC	3 cut(s)	86, 129, 324
HpyAV	CCTTC	4 cut(s)	99, 157, 232, 252
HpyCH4III	ACNGT	6 cut(s)	44, 83, 295, 328, 340, 392
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	3 cut(s)	265, 548, 561
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	407
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	2 cut(s)	490, 503
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	6 cut(s)	5, 193, 376, 394, 412, 462
LguI	GCTCTTC	1 cut(s)	443
LmnI	GCTCC	3 cut(s)	148, 403, 426
LpnPI	CCDG	8 cut(s)	21, 89, 137, 145, 164, 368, 383, 437
Lsp1109I	GCAGC	5 cut(s)	325, 465, 532, 545, 560
LweI	GCATC	2 cut(s)	116, 408
MaeI	CTAG	2 cut(s)	191, 374
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	38, 473
MalI	GATC	6 cut(s)	7, 195, 378, 396, 414, 464
MboI	GATC	6 cut(s)	5, 193, 376, 394, 412, 462
MboII	GAAGA	5 cut(s)	165, 346, 445, 448, 460
MfeI	CAATTG	1 cut(s)	95
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	5 cut(s)	95, 137, 159, 306, 363
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	8 cut(s)	211, 221, 227, 337, 352, 394, 500, 526
MspA1I	CMGCKG	2 cut(s)	103, 427
MunI	CAATTG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeII	GATC	6 cut(s)	5, 193, 376, 394, 412, 462
NlaIII	CATG	2 cut(s)	490, 503
NmuCI	GTSAC	1 cut(s)	473
NspI	RCATGY	1 cut(s)	503
PciI	ACATGT	1 cut(s)	499
PciSI	GCTCTTC	1 cut(s)	443
PfeI	GAWTC	2 cut(s)	154, 251
PkrI	GCNGC	6 cut(s)	102, 315, 455, 547, 550, 560
PscI	ACATGT	1 cut(s)	499
Psp124BI	GAGCTC	1 cut(s)	408
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	462
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SacI	GAGCTC	1 cut(s)	408
SapI	GCTCTTC	1 cut(s)	443
SatI	GCNGC	6 cut(s)	101, 314, 454, 546, 549, 559
Sau3AI	GATC	6 cut(s)	5, 193, 376, 394, 412, 462
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	7 cut(s)	80, 91, 134, 192, 354, 408, 567
SfaNI	GCATC	2 cut(s)	116, 408
SfcI	CTRYAG	1 cut(s)	546
Sse9I	AATT	5 cut(s)	95, 137, 159, 306, 363
SsiI	CCGC	4 cut(s)	22, 101, 427, 528
SspMI	CTAG	2 cut(s)	191, 374
SstI	GAGCTC	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	6 cut(s)	44, 83, 295, 328, 340, 392
TaiI	ACGT	1 cut(s)	567
TasI	AATT	5 cut(s)	95, 137, 159, 306, 363
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	154, 251
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	5 cut(s)	313, 453, 545, 548, 558
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	3 cut(s)	234, 446, 624
TspRI	CASTG	1 cut(s)	15
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	128
XspI	CTAG	2 cut(s)	191, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.