Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Reverse (-)

62528435 .. 62529728

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030498

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAGGATATCAATCCTTGGAAGCTAGAGTCTACATACGCCTTAGGTTCTAAGAAGTTGACGAAGAGGAAGATTAGCTCTGCTTGTTCTAAACATACTCTAGAAATGATTGAAGGGCCTAGAAAAGCTATCTCAGTTGTTCCAGGAGAGGAGGACAGGACAATGATTCATATAATTGAGCAGCAAGTGTTGACGGTTGCGAAGATAGTGGAGGACAAGCTGGACGAGGAAATCGCAGCCCTAGATCGGCTCGACAATGACGATCTGGAGGCGCTCAGGGATCGAATGCTCCAGCAGATGAAGAAGATGGCGGAGAAGCGCAGCCGTTGGATCTCCCTTGGACACGACGAGTACATGGATTCGGACCCGGCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

126

Amino Acids

14.37

Weight (kDa)

5.25

Isoelectric Point (pI)

68.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	1 cut(s)	311
AclWI	GGATC	2 cut(s)	288, 338
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	4 cut(s)	25, 78, 128, 220
AluI	AGCT	4 cut(s)	25, 78, 128, 220
AlwI	GGATC	2 cut(s)	288, 338
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	3 cut(s)	181, 236, 321
AspLEI	GCGC	2 cut(s)	274, 321
AspS9I	GGNCC	2 cut(s)	116, 364
AsuC2I	CCSGG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	364
AxyI	CCTNAGG	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	370
BbvI	GCAGC	3 cut(s)	193, 248, 333
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	309
BciT130I	CCWGG	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	368
BfaI	CTAG	4 cut(s)	26, 101, 120, 242
BfoI	RGCGCY	1 cut(s)	275
BisI	GCNGC	3 cut(s)	182, 237, 322
BlsI	GCNGC	3 cut(s)	183, 238, 323
Bme1390I	CCNGG	2 cut(s)	144, 368
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	2 cut(s)	116, 364
BmiI	GGNNCC	2 cut(s)	366, 372
BmrFI	CCNGG	2 cut(s)	144, 368
BpmI	CTGGAG	2 cut(s)	275, 287
Bpu10I	CCTNAGC	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	17, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse21I	CCTNAGG	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	17, 337
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	147, 289
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	3 cut(s)	193, 248, 333
BshFI	GGCC	1 cut(s)	118
BshNI	GGYRCC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	118
Bsp143I	GATC	4 cut(s)	244, 262, 280, 330
BspACI	CCGC	1 cut(s)	311
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	2 cut(s)	146, 288
BspLI	GGNNCC	2 cut(s)	366, 372
BspPI	GGATC	2 cut(s)	288, 338
BspT107I	GGYRCC	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	17, 337
BssMI	GATC	4 cut(s)	244, 262, 280, 330
BssT1I	CCWWGG	2 cut(s)	17, 337
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	59
BstDEI	CTNAG	4 cut(s)	43, 51, 133, 275
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	2 cut(s)	274, 321
BstKTI	GATC	4 cut(s)	247, 265, 283, 333
BstMBI	GATC	4 cut(s)	244, 262, 280, 330
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	2 cut(s)	142, 366
BstV1I	GCAGC	3 cut(s)	193, 248, 333
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
Bsu36I	CCTNAGG	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	118
CfoI	GCGC	2 cut(s)	274, 321
Cfr13I	GGNCC	2 cut(s)	116, 364
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	8 cut(s)	25, 78, 118, 128, 220, 239, 250, 324
CviKI_1	RGCY	8 cut(s)	25, 78, 118, 128, 220, 239, 250, 324
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	4 cut(s)	43, 51, 133, 275
DpnI	GATC	4 cut(s)	246, 264, 282, 332
DpnII	GATC	4 cut(s)	244, 262, 280, 330
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	326
Eco130I	CCWWGG	2 cut(s)	17, 337
Eco32I	GATATC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	364
Eco81I	CCTNAGG	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	10
EcoT14I	CCWWGG	2 cut(s)	17, 337
ErhI	CCWWGG	2 cut(s)	17, 337
FaeI	CATG	1 cut(s)	358
FaiI	YATR	6 cut(s)	37, 96, 171, 173, 356, 376
FatI	CATG	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	3 cut(s)	182, 237, 322
Fsp4HI	GCNGC	3 cut(s)	182, 237, 322
FspBI	CTAG	4 cut(s)	26, 101, 120, 242
GlaI	GCGC	2 cut(s)	273, 320
GluI	GCNGC	3 cut(s)	182, 237, 322
GsuI	CTGGAG	2 cut(s)	275, 287
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	1 cut(s)	368
HhaI	GCGC	2 cut(s)	274, 321
Hin1II	CATG	1 cut(s)	358
Hin6I	GCGC	2 cut(s)	272, 319
HinP1I	GCGC	2 cut(s)	272, 319
HincII	GTYRAC	2 cut(s)	60, 192
HindII	GTYRAC	2 cut(s)	60, 192
HinfI	GANTC	3 cut(s)	29, 166, 359
HpaII	CCGG	1 cut(s)	368
Hpy166II	GTNNAC	3 cut(s)	33, 60, 192
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	2 cut(s)	101, 266
Hpy8I	GTNNAC	3 cut(s)	33, 60, 192
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	196
HpyF3I	CTNAG	4 cut(s)	43, 51, 133, 275
Hsp92II	CATG	1 cut(s)	358
HspAI	GCGC	2 cut(s)	272, 319
Kzo9I	GATC	4 cut(s)	244, 262, 280, 330
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	7 cut(s)	129, 142, 156, 206, 251, 262, 305
Lsp1109I	GCAGC	3 cut(s)	193, 248, 333
MaeI	CTAG	4 cut(s)	26, 101, 120, 242
MalI	GATC	4 cut(s)	246, 264, 282, 332
MboI	GATC	4 cut(s)	244, 262, 280, 330
MboII	GAAGA	5 cut(s)	76, 82, 214, 313, 316
MflI	RGATCY	1 cut(s)	330
MluCI	AATT	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	6 cut(s)	60, 142, 145, 205, 220, 262
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	144, 368
Mva1269I	GAATGC	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	144
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	4 cut(s)	244, 262, 280, 330
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	2 cut(s)	366, 372
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	166, 359
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	183, 238, 323
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	366, 372
PspPI	GGNCC	2 cut(s)	116, 364
PsuI	RGATCY	1 cut(s)	330
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SatI	GCNGC	3 cut(s)	182, 237, 322
Sau3AI	GATC	4 cut(s)	244, 262, 280, 330
Sau96I	GGNCC	2 cut(s)	116, 364
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	144, 368
SetI	ASST	5 cut(s)	27, 49, 80, 130, 222
SinI	GGWCC	1 cut(s)	364
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	1 cut(s)	311
SspMI	CTAG	4 cut(s)	26, 101, 120, 242
StyD4I	CCNGG	2 cut(s)	142, 366
StyI	CCWWGG	2 cut(s)	17, 337
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	252, 283
TasI	AATT	1 cut(s)	174
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	2 cut(s)	166, 359
TseI	GCWGC	3 cut(s)	181, 236, 321
TspDTI	ATGAA	2 cut(s)	158, 314
VpaK11BI	GGWCC	1 cut(s)	364
XbaI	TCTAGA	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	4 cut(s)	26, 101, 120, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.