Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

58624868 .. 58662015

Gene Structure 37148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG360700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTTCCCATTGTTCCATGTGCTTGGTCCTTTCACTCCTTTCTTTGATTTGTACGTGTACAACAAACTGAAATTTTTTCTCGGTCCTTCTCATCGGCGACTCGGGGAATTGAATATTGTTTTCTGGTGTTGTGAGGTTGAACAAGGCAAAGGTACACTTTGGGCTGCGAAAGCAATACTCCTGCCTTTGACTTTTCAGGATACCCATGTGGAGGCACCTGAAGAGTTCTCAAAGAAGGCTACACCGTTCTTTGCTCATGTTGCTGATAAGTTTTATGCCAAAGTCAATGATGATGTTTATTTAAATAGTGATGTTCTGGGAGCTGCACTTGCAACTCATTTAGACAAGCCTTGCATTTATATTGGGTGCATGCAGTCGGGCGAAGTTTTCTCTGAACTAGGATCTAATGCAATAAAACGGTCCACGAACTTTGTACTCTTGGAAGCAATCTCTCCTCCGCTCATCAATTACCAGTATGCTAGGCCCTGCACCAGACCAAATATGAAAGCATTACCATTTATATTGGATGAGGCTGCGGTGCAAAATATATTTTTAAAGTCCCTAGACAACTATATAAAGTGGTGTAACTACTTGTGCATTCAGCCAGTTTGGAGCAATTTGCAGTCAGTTAGGAAGGAGAAAAAGCTACTGTTTGTTTCCATGTACTGTTTGATCTGGGGTGAAGCAGCCAATAATCTTTCAAAATCTGCAAAAGTTGGCGTTCATTCTACGATCACGTGCCGAGCACGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0001558 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009846 GO:0009856 GO:0009987 GO:0010769 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033037 GO:0034293 GO:0040007 GO:0040008 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044706 GO:0045229 GO:0045595 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048589 GO:0048609 GO:0048638 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051239 GO:0051321 GO:0051510 GO:0051641 GO:0051704 GO:0052386 GO:0052543 GO:0052545 GO:0055047 GO:0060284 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080092 GO:0140014 GO:1903046 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

251

Amino Acids

28.49

Weight (kDa)

8.5

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccBSI	CCGCTC	1 cut(s)	460
AciI	CCGC	2 cut(s)	458, 536
AclWI	GGATC	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	240
AcvI	CACGTG	2 cut(s)	738, 749
AfaI	GTAC	5 cut(s)	53, 59, 154, 435, 665
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	3 cut(s)	112, 140, 702
AluBI	AGCT	2 cut(s)	323, 646
AluI	AGCT	2 cut(s)	323, 646
Alw21I	GWGCWC	1 cut(s)	748
AlwI	GGATC	1 cut(s)	409
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	4 cut(s)	164, 323, 533, 686
ApoI	RAATTY	1 cut(s)	71
AspS9I	GGNCC	4 cut(s)	26, 83, 420, 483
AsuHPI	GGTGA	1 cut(s)	692
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	3 cut(s)	26, 83, 420
BaeI	ACNNNNGTAYC	2 cut(s)	192, 225
BanI	GGYRCC	1 cut(s)	214
BbrPI	CACGTG	2 cut(s)	738, 749
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	4 cut(s)	151, 310, 520, 698
BciVI	GTATCC	1 cut(s)	193
BfaI	CTAG	3 cut(s)	398, 480, 563
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	4 cut(s)	165, 324, 534, 687
BlsI	GCNGC	4 cut(s)	166, 325, 535, 688
Bme18I	GGWCC	3 cut(s)	26, 83, 420
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	4 cut(s)	26, 83, 420, 483
BmiI	GGNNCC	1 cut(s)	216
BsaAI	YACGTR	3 cut(s)	55, 738, 749
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	472, 605
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseNI	ACTGG	2 cut(s)	472, 605
BseRI	GAGGAG	1 cut(s)	444
BseXI	GCAGC	4 cut(s)	151, 310, 520, 698
BsgI	GTGCAG	2 cut(s)	309, 472
BshFI	GGCC	1 cut(s)	484
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	748
BsiHKCI	CYCGRG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	544
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	401, 672, 732
BspACI	CCGC	2 cut(s)	458, 536
BspANI	GGCC	1 cut(s)	484
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	214
BsrBI	CCGCTC	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	472, 605
BssMI	GATC	3 cut(s)	401, 672, 732
Bst4CI	ACNGT	4 cut(s)	246, 420, 651, 668
Bst6I	CTCTTC	1 cut(s)	216
BstAUI	TGTACA	1 cut(s)	57
BstBAI	YACGTR	3 cut(s)	55, 738, 749
BstC8I	GCNNGC	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	532
BstKTI	GATC	3 cut(s)	404, 675, 735
BstMBI	GATC	3 cut(s)	401, 672, 732
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 260, 329
BstNSI	RCATGY	1 cut(s)	373
BstV1I	GCAGC	4 cut(s)	151, 310, 520, 698
BstX2I	RGATCY	1 cut(s)	401
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	401
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	371
Cfr13I	GGNCC	4 cut(s)	26, 83, 420, 483
Csp6I	GTAC	5 cut(s)	52, 58, 153, 434, 664
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	5 cut(s)	17, 206, 257, 370, 661
CviJI	RGCY	9 cut(s)	164, 239, 323, 349, 484, 533, 604, 646, 689
CviKI_1	RGCY	9 cut(s)	164, 239, 323, 349, 484, 533, 604, 646, 689
CviQI	GTAC	5 cut(s)	52, 58, 153, 434, 664
DpnI	GATC	3 cut(s)	403, 674, 734
DpnII	GATC	3 cut(s)	401, 672, 732
DraI	TTTAAA	2 cut(s)	303, 555
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco47I	GGWCC	3 cut(s)	26, 83, 420
Eco57I	CTGAAG	1 cut(s)	240
Eco72I	CACGTG	2 cut(s)	738, 749
Eco88I	CYCGRG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	483
FaeI	CATG	5 cut(s)	20, 209, 260, 373, 664
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	5 cut(s)	16, 205, 256, 369, 660
Fnu4HI	GCNGC	4 cut(s)	165, 324, 534, 687
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	4 cut(s)	165, 324, 534, 687
FspBI	CTAG	3 cut(s)	398, 480, 563
GluI	GCNGC	4 cut(s)	165, 324, 534, 687
HaeIII	GGCC	1 cut(s)	484
Hin1II	CATG	5 cut(s)	20, 209, 260, 373, 664
HinfI	GANTC	1 cut(s)	99
HphI	GGTGA	1 cut(s)	692
Hpy166II	GTNNAC	3 cut(s)	58, 155, 423
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	3 cut(s)	58, 155, 423
HpyAV	CCTTC	3 cut(s)	96, 229, 628
HpyCH4III	ACNGT	4 cut(s)	246, 420, 651, 668
HpyCH4IV	ACGT	3 cut(s)	54, 737, 748
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 260, 329
HpySE526I	ACGT	3 cut(s)	54, 737, 748
Hsp92II	CATG	5 cut(s)	20, 209, 260, 373, 664
Kzo9I	GATC	3 cut(s)	401, 672, 732
LmnI	GCTCC	2 cut(s)	320, 612
Lsp1109I	GCAGC	4 cut(s)	151, 310, 520, 698
MaeI	CTAG	3 cut(s)	398, 480, 563
MaeII	ACGT	3 cut(s)	54, 737, 748
MaeIII	GTNAC	1 cut(s)	584
MalI	GATC	3 cut(s)	403, 674, 734
MbiI	CCGCTC	1 cut(s)	460
MboI	GATC	3 cut(s)	401, 672, 732
MboII	GAAGA	1 cut(s)	233
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	1 cut(s)	748
MluCI	AATT	4 cut(s)	71, 107, 466, 616
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	4 cut(s)	127, 205, 465, 523
MseI	TTAA	2 cut(s)	302, 554
Mva1269I	GAATGC	1 cut(s)	597
MwoI	GCNNNNNNNGC	3 cut(s)	170, 260, 329
NdeII	GATC	3 cut(s)	401, 672, 732
NlaIII	CATG	5 cut(s)	20, 209, 260, 373, 664
NlaIV	GGNNCC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	373
PaeI	GCATGC	1 cut(s)	373
PctI	GAATGC	1 cut(s)	597
PkrI	GCNGC	4 cut(s)	166, 325, 535, 688
PleI	GAGTC	1 cut(s)	93
PmaCI	CACGTG	2 cut(s)	738, 749
PmlI	CACGTG	2 cut(s)	738, 749
PpsI	GAGTC	1 cut(s)	93
Ppu21I	YACGTR	3 cut(s)	55, 738, 749
PspCI	CACGTG	2 cut(s)	738, 749
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	4 cut(s)	26, 83, 420, 483
PsuI	RGATCY	1 cut(s)	401
RsaI	GTAC	5 cut(s)	53, 59, 154, 435, 665
RsaNI	GTAC	5 cut(s)	52, 58, 153, 434, 664
SaqAI	TTAA	2 cut(s)	302, 554
SatI	GCNGC	4 cut(s)	165, 324, 534, 687
Sau3AI	GATC	3 cut(s)	401, 672, 732
Sau96I	GGNCC	4 cut(s)	26, 83, 420, 483
SchI	GAGTC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	748
SetI	ASST	8 cut(s)	57, 138, 154, 220, 325, 648, 740, 751
SinI	GGWCC	3 cut(s)	26, 83, 420
SmiI	ATTTAAAT	1 cut(s)	303
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	4 cut(s)	71, 107, 466, 616
SsiI	CCGC	2 cut(s)	458, 536
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	3 cut(s)	398, 480, 563
SwaI	ATTTAAAT	1 cut(s)	303
TaaI	ACNGT	4 cut(s)	246, 420, 651, 668
TaiI	ACGT	3 cut(s)	57, 740, 751
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	4 cut(s)	71, 107, 466, 616
TatI	WGTACW	3 cut(s)	57, 433, 663
Tru1I	TTAA	2 cut(s)	302, 554
Tru9I	TTAA	2 cut(s)	302, 554
TseI	GCWGC	4 cut(s)	164, 323, 533, 686
TspDTI	ATGAA	2 cut(s)	518, 713
VpaK11BI	GGWCC	3 cut(s)	26, 83, 420
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	3 cut(s)	398, 480, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.