Rh2CG492900

Novel plant snare

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000840
Physical Location & Seq
Forward (+)
66025161 .. 66035679
10519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG492900.1

Sequence Viewer

Length: 546 bp
ATGGCTCTCATGCATGTTATTGGAACTTCCTCTCAGGTTGGCCTCCTCAAAATTCATTTGAGGTTAACTGAAATTGTGGGTATTTCAGGTATGACACATCAGCAACTTATTGATCATGTACACCAAATGATGGATGAGACTGATCAAGCGATTGATAGAGCACAAAGGTTCTTCATCAGACTATCAACTGAGGACTATGACTTTGAATGCTTTTGGGTGAAGATACTACTAAGCTTCCTCTGCCATATCTTAAAGTCGGATATCTTACTGTACAACCACAACACAAAGCAAAGCCCAGGACACGAGCATAACTCTCCAGGTCACAGTCCAAGTTTACAACAGAATGGATCTAAAGATATAAAACCCAATTCTGAGCCGAGTCTTGAAGATTTGAAGTTTGGGCATATAGGTTCTGCTCTGCTTTTATATAATGGCTGCAGCATTGGATGCGCCAGAATGAGAAAACCTGGAGTATGTAAATTGGGGAAACTTTGGATGACATACGCTTTGTGGATGACCAGATATGTTTACCTGTCAATAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec20

Protein Analysis

181

Amino Acids

20.6

Weight (kDa)

7.74

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 130
AclWI GGATC 1 cut(s) 355
AcsI RAATTY 1 cut(s) 51
AfaI GTAC 2 cut(s) 120, 272
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 3 cut(s) 206, 386, 394
AjnI CCWGG 3 cut(s) 295, 316, 466
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 355
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 435, 438
ApoI RAATTY 1 cut(s) 51
ArsI GACNNNNNNTTYG 4 cut(s) 185, 217, 490, 522
AspLEI GCGC 1 cut(s) 452
AsuHPI GGTGA 1 cut(s) 229
BauI CACGAG 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 2 cut(s) 422, 450
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 3 cut(s) 297, 318, 468
BclI TGATCA 2 cut(s) 112, 142
BcoDI GTCTC 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 436
BisI GCNGC 2 cut(s) 436, 439
BlsI GCNGC 2 cut(s) 437, 440
Bme1390I CCNGG 3 cut(s) 297, 318, 468
BmrFI CCNGG 3 cut(s) 297, 318, 468
BmsI GCATC 1 cut(s) 437
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BpmI CTGGAG 2 cut(s) 300, 489
BsaJI CCNNGG 1 cut(s) 295
Bsc4I CCNNNNNNNGG 1 cut(s) 130
BseBI CCWGG 3 cut(s) 297, 318, 468
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 4 cut(s) 139, 452, 501, 519
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 3 cut(s) 47, 180, 363
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 422, 450
BshFI GGCC 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 163
Bsp1407I TGTACA 2 cut(s) 118, 270
Bsp143I GATC 3 cut(s) 112, 142, 347
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 3 cut(s) 46, 181, 364
BspMAI CTGCAG 1 cut(s) 440
BspPI GGATC 1 cut(s) 355
BsrGI TGTACA 2 cut(s) 118, 270
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 3 cut(s) 112, 142, 347
BssSI CACGAG 1 cut(s) 302
Bst2BI CACGAG 1 cut(s) 302
Bst2UI CCWGG 3 cut(s) 297, 318, 468
Bst4CI ACNGT 2 cut(s) 270, 326
BstAPI GCANNNNNTGC 1 cut(s) 447
BstAUI TGTACA 2 cut(s) 118, 270
BstDEI CTNAG 4 cut(s) 33, 189, 230, 372
BstF5I GGATG 4 cut(s) 139, 452, 501, 519
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 3 cut(s) 115, 145, 350
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 3 cut(s) 112, 142, 347
BstMWI GCNNNNNNNGC 2 cut(s) 240, 447
BstNI CCWGG 3 cut(s) 297, 318, 468
BstNSI RCATGY 1 cut(s) 17
BstSCI CCNGG 3 cut(s) 295, 316, 466
BstSFI CTRYAG 1 cut(s) 436
BstV1I GCAGC 2 cut(s) 422, 450
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuRI GGCC 1 cut(s) 42
BtsCI GGATG 4 cut(s) 139, 452, 501, 519
CfoI GCGC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 119, 271
CviAII CATG 3 cut(s) 10, 14, 116
CviJI RGCY 6 cut(s) 5, 42, 234, 294, 376, 435
CviKI_1 RGCY 6 cut(s) 5, 42, 234, 294, 376, 435
CviQI GTAC 2 cut(s) 119, 271
DdeI CTNAG 4 cut(s) 33, 189, 230, 372
DpnI GATC 3 cut(s) 114, 144, 349
DpnII GATC 3 cut(s) 112, 142, 347
Eco32I GATATC 1 cut(s) 262
EcoRII CCWGG 3 cut(s) 295, 316, 466
EcoRV GATATC 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 15
FaeI CATG 3 cut(s) 13, 17, 119
FatI CATG 3 cut(s) 9, 13, 115
FbaI TGATCA 2 cut(s) 112, 142
Fnu4HI GCNGC 2 cut(s) 436, 439
FokI GGATG 4 cut(s) 146, 459, 508, 526
Fsp4HI GCNGC 2 cut(s) 436, 439
GlaI GCGC 1 cut(s) 451
GluI GCNGC 2 cut(s) 436, 439
GsuI CTGGAG 2 cut(s) 300, 489
HaeIII GGCC 1 cut(s) 42
HhaI GCGC 1 cut(s) 452
Hin1II CATG 3 cut(s) 13, 17, 119
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 232
HinfI GANTC 1 cut(s) 379
HpaI GTTAAC 1 cut(s) 66
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 4 cut(s) 66, 121, 335, 529
Hpy188I TCNGA 3 cut(s) 179, 259, 373
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 4 cut(s) 66, 121, 335, 529
HpyCH4III ACNGT 2 cut(s) 270, 326
HpyCH4IV ACGT 1 cut(s) 542
HpyCH4V TGCA 2 cut(s) 13, 438
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 447
HpyF3I CTNAG 4 cut(s) 33, 189, 230, 372
HpySE526I ACGT 1 cut(s) 542
Hsp92II CATG 3 cut(s) 13, 17, 119
HspAI GCGC 1 cut(s) 450
Ksp22I TGATCA 2 cut(s) 112, 142
KspAI GTTAAC 1 cut(s) 66
Kzo9I GATC 3 cut(s) 112, 142, 347
Lsp1109I GCAGC 2 cut(s) 422, 450
LweI GCATC 1 cut(s) 437
MaeII ACGT 1 cut(s) 542
MaeIII GTNAC 1 cut(s) 320
MalI GATC 3 cut(s) 114, 144, 349
MboI GATC 3 cut(s) 112, 142, 347
MboII GAAGA 3 cut(s) 163, 232, 398
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 4 cut(s) 51, 72, 367, 479
MlyI GAGTC 1 cut(s) 388
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 6 cut(s) 40, 53, 54, 56, 184, 248
Mph1103I ATGCAT 1 cut(s) 15
MseI TTAA 2 cut(s) 65, 251
MspR9I CCNGG 3 cut(s) 297, 318, 468
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 3 cut(s) 297, 318, 468
MwoI GCNNNNNNNGC 2 cut(s) 240, 447
NdeII GATC 3 cut(s) 112, 142, 347
NlaIII CATG 3 cut(s) 13, 17, 119
NmeAIII GCCGAG 1 cut(s) 402
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 15
NspI RCATGY 1 cut(s) 17
PctI GAATGC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 130
PkrI GCNGC 2 cut(s) 437, 440
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
Psp6I CCWGG 3 cut(s) 295, 316, 466
PspGI CCWGG 3 cut(s) 295, 316, 466
PstI CTGCAG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 347
RsaI GTAC 2 cut(s) 120, 272
RsaNI GTAC 2 cut(s) 119, 271
SaqAI TTAA 2 cut(s) 65, 251
SatI GCNGC 2 cut(s) 436, 439
Sau3AI GATC 3 cut(s) 112, 142, 347
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 3 cut(s) 297, 318, 468
SduI GDGCHC 1 cut(s) 163
SfaNI GCATC 1 cut(s) 437
SfcI CTRYAG 1 cut(s) 436
Sse9I AATT 4 cut(s) 51, 72, 367, 479
StyD4I CCNGG 3 cut(s) 295, 316, 466
TaaI ACNGT 2 cut(s) 270, 326
TaiI ACGT 1 cut(s) 545
TasI AATT 4 cut(s) 51, 72, 367, 479
TatI WGTACW 2 cut(s) 118, 270
Tru1I TTAA 2 cut(s) 65, 251
Tru9I TTAA 2 cut(s) 65, 251
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 2 cut(s) 435, 438
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 44, 163
Van91I CCANNNNNTGG 1 cut(s) 130
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.