Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

57541776 .. 57542304

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG428200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCGAACCAAGCCATCCAAGAGATAATTGAGCAGCAAGTGCTCACGGTGGCGAAGGTGGTGGAGGACAAGCTCGACGAGCATATCGCAACCCTAGATCGGGTGGACGACAACGATTTGGAGGTGCTAAGAGAGTGGAAGCTCCAGCAGATGAAGAAGAAATGGATTTTCAGGGTGCAGATCTTGCTGGAGGAGACGTCTTTGAAGGAGCGGTTTAGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

74

Amino Acids

8.88

Weight (kDa)

5.11

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	200
AccBSI	CCGCTC	1 cut(s)	211
AciI	CCGC	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	99, 100
AgsI	TTSAA	1 cut(s)	205
AluBI	AGCT	2 cut(s)	73, 142
AluI	AGCT	2 cut(s)	73, 142
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	2 cut(s)	95, 223
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	219
BpmI	CTGGAG	2 cut(s)	128, 209
BsaHI	GRCGYC	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 100
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	2 cut(s)	99, 100
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	46
BsgI	GTGCAG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	45
BslI	CCNNNNNNNGG	2 cut(s)	99, 100
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	97, 180
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	211
BssMI	GATC	2 cut(s)	97, 180
BssNI	GRCGYC	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	197
BstAPI	GCANNNNNTGC	2 cut(s)	40, 184
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	15
BstKTI	GATC	2 cut(s)	100, 183
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	97, 180
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 40, 79, 184
BstV1I	GCAGC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	219
CviJI	RGCY	4 cut(s)	14, 73, 142, 221
CviKI_1	RGCY	4 cut(s)	14, 73, 142, 221
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	99, 182
DpnII	GATC	2 cut(s)	97, 180
EcoO109I	RGGNCCY	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	188
FaiI	YATR	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	2
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	2 cut(s)	95, 223
GluI	GCNGC	1 cut(s)	35
GsuI	CTGGAG	2 cut(s)	128, 209
HaeIII	GGCC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	49, 199
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 40, 79, 184
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	97, 180
LmnI	GCTCC	2 cut(s)	147, 208
LpnPI	CCDG	3 cut(s)	157, 158, 173
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	2 cut(s)	95, 223
MaeII	ACGT	1 cut(s)	197
MalI	GATC	2 cut(s)	99, 182
MbiI	CCGCTC	1 cut(s)	211
MboI	GATC	2 cut(s)	97, 180
MboII	GAAGA	2 cut(s)	166, 169
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	3 cut(s)	58, 115, 184
MwoI	GCNNNNNNNGC	4 cut(s)	11, 40, 79, 184
NdeII	GATC	2 cut(s)	97, 180
PkrI	GCNGC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	180
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	97, 180
Sau96I	GGNCC	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	5 cut(s)	60, 75, 126, 144, 200
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	2 cut(s)	95, 223
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	27
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	167
XspI	CTAG	2 cut(s)	95, 223
ZraI	GACGTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.