Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

9669976 .. 9670777

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011470

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGAAGAGGGGCACCTCCAACGCCAAACCATGATGAAGCGCACAAAAATGGCGCCATTGCAGTGGCGCCACTATCACTACCACCTGTTCCAGTATCTTATTCCGCTCACTTCCGCCACTTGGAGATGATGGGTGTTTTGCTTAGAGATTTGAAGCTTGGAGATGATGGTGTTCTGCTTCACATTGATTTGGTTGCAGGAAAGCGGCGATTAGGTAAAGATGGTGAAGGAGAGGAGGGTCATGAGGAGGGAGCGGAGGGCGGGGATAGGTCTGAGAGGGACGGGTCGACCCGGGTGGCAGAGGATGGCAAGGAGGAGGTGGAGGAGGACGAAGATGGTGAGGTAGAGGGCAATGGCGGTAATGGAGATGCTGATCCTCGTTGTCGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004642 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0016874 GO:0016879 GO:0016884 GO:0017076 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0055046 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS_C GATase_5

Protein Analysis

131

Amino Acids

13.9

Weight (kDa)

4.72

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	13, 53, 67
AccBSI	CCGCTC	2 cut(s)	107, 254
AccI	GTMKAC	1 cut(s)	287
AciI	CCGC	6 cut(s)	105, 115, 205, 254, 261, 357
AclWI	GGATC	1 cut(s)	368
AcyI	GRCGYC	2 cut(s)	54, 68
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
AlwI	GGATC	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	291
AspLEI	GCGC	3 cut(s)	43, 56, 70
AsuC2I	CCSGG	2 cut(s)	292, 293
AsuHPI	GGTGA	2 cut(s)	236, 350
AvaI	CYCGRG	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	16
BanI	GGYRCC	3 cut(s)	13, 53, 67
BccI	CCATC	5 cut(s)	124, 161, 215, 299, 329
BcnI	CCSGG	2 cut(s)	292, 293
BfoI	RGCGCY	2 cut(s)	57, 71
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	2 cut(s)	292, 293
BmeT110I	CYCGRG	1 cut(s)	291
BmiI	GGNNCC	3 cut(s)	15, 55, 69
BmrFI	CCNGG	2 cut(s)	292, 293
BmsI	GCATC	1 cut(s)	358
BpuMI	CCSGG	2 cut(s)	292, 293
BsaBI	GATNNNNATC	1 cut(s)	372
BsaHI	GRCGYC	2 cut(s)	54, 68
BsaJI	CCNNGG	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	92
Bse3DI	GCAATG	2 cut(s)	57, 358
Bse8I	GATNNNNATC	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	310
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	2 cut(s)	57, 358
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	4 cut(s)	248, 260, 329, 338
BseSI	GKGCMC	1 cut(s)	16
BshNI	GGYRCC	3 cut(s)	13, 53, 67
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	292
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	6 cut(s)	105, 115, 205, 254, 261, 357
BspCNI	CTCAG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	3 cut(s)	15, 55, 69
BspPI	GGATC	1 cut(s)	368
BspT107I	GGYRCC	3 cut(s)	13, 53, 67
BsrBI	CCGCTC	2 cut(s)	107, 254
BsrDI	GCAATG	2 cut(s)	57, 358
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	1 cut(s)	373
BssNI	GRCGYC	2 cut(s)	54, 68
BstACI	GRCGYC	2 cut(s)	54, 68
BstDEI	CTNAG	2 cut(s)	143, 273
BstF5I	GGATG	1 cut(s)	310
BstH2I	RGCGCY	2 cut(s)	57, 71
BstHHI	GCGC	3 cut(s)	43, 56, 70
BstKTI	GATC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	290, 291
BstSLI	GKGCMC	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	3 cut(s)	43, 56, 70
Cfr9I	CCCGGG	1 cut(s)	291
CviAII	CATG	2 cut(s)	32, 242
CviJI	RGCY	1 cut(s)	157
CviKI_1	RGCY	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	143, 273
DinI	GGCGCC	2 cut(s)	55, 69
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
EciI	GGCGGA	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	291
EgeI	GGCGCC	2 cut(s)	55, 69
EheI	GGCGCC	2 cut(s)	55, 69
FaeI	CATG	2 cut(s)	35, 245
FaiI	YATR	2 cut(s)	33, 243
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	2 cut(s)	31, 241
FauI	CCCGC	1 cut(s)	254
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	206
GlaI	GCGC	3 cut(s)	42, 55, 69
GluI	GCNGC	1 cut(s)	206
HaeII	RGCGCY	2 cut(s)	57, 71
HapII	CCGG	1 cut(s)	292
HhaI	GCGC	3 cut(s)	43, 56, 70
Hin1I	GRCGYC	2 cut(s)	54, 68
Hin1II	CATG	2 cut(s)	35, 245
Hin6I	GCGC	3 cut(s)	41, 54, 68
HinP1I	GCGC	3 cut(s)	41, 54, 68
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HindIII	AAGCTT	1 cut(s)	155
HpaII	CCGG	1 cut(s)	292
HphI	GGTGA	2 cut(s)	236, 350
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	1 cut(s)	221
HpyCH4V	TGCA	2 cut(s)	62, 197
HpyF3I	CTNAG	2 cut(s)	143, 273
Hsp92I	GRCGYC	2 cut(s)	54, 68
Hsp92II	CATG	2 cut(s)	35, 245
HspAI	GCGC	3 cut(s)	41, 54, 68
KasI	GGCGCC	2 cut(s)	53, 67
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	4 cut(s)	99, 105, 183, 305
LweI	GCATC	1 cut(s)	358
MalI	GATC	1 cut(s)	375
MbiI	CCGCTC	2 cut(s)	107, 254
MboI	GATC	1 cut(s)	373
MboII	GAAGA	2 cut(s)	18, 344
MhlI	GDGCHC	1 cut(s)	16
Mly113I	GGCGCC	2 cut(s)	54, 68
MmeI	TCCRAC	1 cut(s)	44
MslI	CAYNNNNRTG	2 cut(s)	48, 62
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	2 cut(s)	292, 293
NarI	GGCGCC	2 cut(s)	54, 68
NciI	CCSGG	2 cut(s)	292, 293
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	2 cut(s)	35, 245
NlaIV	GGNNCC	3 cut(s)	15, 55, 69
PagI	TCATGA	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	207
PluTI	GGCGCC	2 cut(s)	57, 71
PspN4I	GGNNCC	3 cut(s)	15, 55, 69
RseI	CAYNNNNRTG	2 cut(s)	48, 62
SalI	GTCGAC	1 cut(s)	286
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	292, 293
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	7 cut(s)	19, 88, 159, 217, 272, 321, 345
SfaNI	GCATC	1 cut(s)	358
SfoI	GGCGCC	2 cut(s)	55, 69
SmaI	CCCGGG	1 cut(s)	293
SmiMI	CAYNNNNRTG	2 cut(s)	48, 62
SsiI	CCGC	6 cut(s)	105, 115, 205, 254, 261, 357
SspDI	GGCGCC	2 cut(s)	53, 67
StyD4I	CCNGG	2 cut(s)	290, 291
TaqI	TCGA	1 cut(s)	287
TauI	GCSGC	1 cut(s)	208
TscAI	CASTG	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	51
TspMI	CCCGGG	1 cut(s)	291
TspRI	CASTG	1 cut(s)	69
XmaI	CCCGGG	1 cut(s)	291
XmiI	GTMKAC	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.