Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

52277536 .. 52279350

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGACATGTGCTGCCTGTGCCGGGTCTGTGGAGAAGGCGGTGAAGCGGCTCCCGGGGATACAGGAGGCCGCCGTGGACGTGTTGAACAACACAGCCCTTGTTCTCTACTATCCCAGCTTCGTCAATGAGGACAAAATATGTGAGGCTATTAAAGATGCTGGATTTGAAGCTAAACTGATTAAGCTGGAGATGAATGAAAAAACTAGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

70

Amino Acids

7.59

Weight (kDa)

4.87

Isoelectric Point (pI)

25.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	1 - 56	7.6e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	38, 46, 69
AfiI	CCNNNNNNNGG	1 cut(s)	21
AflIII	ACRYGT	2 cut(s)	5, 78
AgsI	TTSAA	2 cut(s)	85, 167
AhlI	ACTAGT	1 cut(s)	203
AjiI	CACGTC	1 cut(s)	79
AluBI	AGCT	3 cut(s)	117, 170, 184
AluI	AGCT	3 cut(s)	117, 170, 184
Ama87I	CYCGRG	1 cut(s)	52
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	11
AsuC2I	CCSGG	3 cut(s)	22, 53, 54
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	56
BciVI	GTATCC	1 cut(s)	51
BcnI	CCSGG	3 cut(s)	22, 53, 54
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	3 cut(s)	12, 47, 69
BlsI	GCNGC	3 cut(s)	13, 48, 70
Bme1390I	CCNGG	3 cut(s)	22, 53, 54
BmeT110I	CYCGRG	1 cut(s)	52
BmgBI	CACGTC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	3 cut(s)	22, 53, 54
BmsI	GCATC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	206
BpuMI	CCSGG	3 cut(s)	22, 53, 54
BsaJI	CCNNGG	3 cut(s)	52, 53, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
BseDI	CCNNGG	3 cut(s)	52, 53, 72
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	113
BshFI	GGCC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	21, 53
BslI	CCNNNNNNNGG	1 cut(s)	21
BsnI	GGCC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	52
BspACI	CCGC	3 cut(s)	38, 46, 69
BspANI	GGCC	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	50
BssECI	CCNNGG	3 cut(s)	52, 53, 72
BstDSI	CCRYGG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	9
BstSCI	CCNGG	3 cut(s)	20, 51, 52
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	72
BtrI	CACGTC	1 cut(s)	79
Cfr9I	CCCGGG	1 cut(s)	52
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	7 cut(s)	49, 68, 95, 117, 146, 170, 184
CviKI_1	RGCY	7 cut(s)	49, 68, 95, 117, 146, 170, 184
Eco88I	CYCGRG	1 cut(s)	52
FaeI	CATG	1 cut(s)	9
FaiI	YATR	2 cut(s)	7, 139
FatI	CATG	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	12, 47, 69
Fsp4HI	GCNGC	3 cut(s)	12, 47, 69
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	3 cut(s)	12, 47, 69
GsaI	CCCAGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	2 cut(s)	21, 53
Hin1II	CATG	1 cut(s)	9
HpaII	CCGG	2 cut(s)	21, 53
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	7 cut(s)	28, 34, 47, 66, 127, 144, 170
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	78
MnlI	CCTC	3 cut(s)	58, 121, 136
MseI	TTAA	2 cut(s)	150, 180
MspI	CCGG	2 cut(s)	21, 53
MspR9I	CCNGG	3 cut(s)	22, 53, 54
MwoI	GCNNNNNNNGC	1 cut(s)	17
NciI	CCSGG	3 cut(s)	22, 53, 54
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	9
PciI	ACATGT	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	13, 48, 70
PscI	ACATGT	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	150, 180
SatI	GCNGC	3 cut(s)	12, 47, 69
ScrFI	CCNGG	3 cut(s)	22, 53, 54
SetI	ASST	4 cut(s)	81, 119, 172, 186
SfaNI	GCATC	1 cut(s)	145
SmaI	CCCGGG	1 cut(s)	54
SpeI	ACTAGT	1 cut(s)	203
SsiI	CCGC	3 cut(s)	38, 46, 69
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	3 cut(s)	20, 51, 52
TaiI	ACGT	1 cut(s)	81
TauI	GCSGC	2 cut(s)	49, 71
Tru1I	TTAA	2 cut(s)	150, 180
Tru9I	TTAA	2 cut(s)	150, 180
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	206, 210
TspMI	CCCGGG	1 cut(s)	52
XceI	RCATGY	1 cut(s)	9
XmaI	CCCGGG	1 cut(s)	52
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.