Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Reverse (-)

33668246 .. 33673007

Gene Structure 4762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG324200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATGGATGAGACTGATCAAGCGATTGATAGAACACAAAGGTTCTTCATCAGACTATCAACTGAGGACTATGACTTTGAATGCTTTTGGGTGAAGATACTACCAAGCTTCCTCTGCCATATCTTAAAGGCTTCAACATCAGGTCACCAAAGATATGAGATCAATGAAATTTTTGGGATACCAAAGTTATTAGTTTATGGACCCAAAGCAGGGACAAAGAAGAATGAAAATCCTGAAAGGCTTGCATTGAGGTTATTTGGAAGCCTAAAACATCCCAGAGTGTCTGATCTTTCCCAAGATGAGGAAGAAAACTTGAGCAAAACCCTATTGCCACCATACATCTTTCCAAAGCTTGAAGATGTCCTTACTCTTCTTCCCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

127

Amino Acids

14.79

Weight (kDa)

5.79

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	168
AfiI	CCNNNNNNNGG	3 cut(s)	209, 210, 301
AgsI	TTSAA	3 cut(s)	80, 135, 356
AluBI	AGCT	2 cut(s)	108, 352
AluI	AGCT	2 cut(s)	108, 352
Alw26I	GTCTC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	168
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	103, 137
AvaII	GGWCC	1 cut(s)	200
BaeI	ACNNNNGTAYC	2 cut(s)	170, 203
BciVI	GTATCC	1 cut(s)	171
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	5
BfuI	GTATCC	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 210, 301
BseGI	GGATG	2 cut(s)	13, 271
BseLI	CCNNNNNNNGG	3 cut(s)	209, 210, 301
BseMII	CTCAG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	3 cut(s)	209, 210, 301
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	16, 159, 286
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	202
BssMI	GATC	3 cut(s)	16, 159, 286
Bst6I	CTCTTC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	63
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	13, 271
BstKTI	GATC	3 cut(s)	19, 162, 289
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	3 cut(s)	16, 159, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstPI	GGTNACC	1 cut(s)	143
BsuI	GTATCC	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	13, 271
Cac8I	GCNNGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	200
CviJI	RGCY	5 cut(s)	108, 131, 241, 264, 352
CviKI_1	RGCY	5 cut(s)	108, 131, 241, 264, 352
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	3 cut(s)	18, 161, 288
DpnII	GATC	3 cut(s)	16, 159, 286
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	200
Eco91I	GGTNACC	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	143
FaiI	YATR	5 cut(s)	72, 120, 156, 198, 337
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FaqI	GGGAC	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	16
FokI	GGATG	2 cut(s)	20, 258
HindIII	AAGCTT	2 cut(s)	106, 350
HphI	GGTGA	2 cut(s)	103, 137
Hpy188I	TCNGA	2 cut(s)	53, 286
Hpy188III	TCNNGA	1 cut(s)	233
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	16, 159, 286
LpnPI	CCDG	4 cut(s)	126, 195, 246, 289
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	3 cut(s)	18, 161, 288
MboI	GATC	3 cut(s)	16, 159, 286
MboII	GAAGA	7 cut(s)	37, 106, 232, 317, 362, 365, 368
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	4 cut(s)	58, 122, 243, 295
MseI	TTAA	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	114
NdeII	GATC	3 cut(s)	16, 159, 286
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	143
PctI	GAATGC	1 cut(s)	86
PspEI	GGTNACC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	125
Sau3AI	GATC	3 cut(s)	16, 159, 286
Sau96I	GGNCC	1 cut(s)	200
SetI	ASST	5 cut(s)	44, 110, 145, 254, 354
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	1 cut(s)	168
TasI	AATT	1 cut(s)	168
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	3 cut(s)	37, 180, 240
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.