Rh6AG252400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000840
Physical Location & Seq
Reverse (-)
44133120 .. 44143794
10675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG252400.1

Sequence Viewer

Length: 756 bp
ATGGATTGGAAATTGGTCTCCTACTACTTTCCCGATCGGTCAAACGCTGAGGAATTCGAGGACTCGTCTGCCCCGAACGAGGTCGGGAGCTCTGGCGAGGGATCGACGTCGTCGGGGAGTGAGATTAGGCTGGAAAAGCGGTTGACAGGGATACTGGTTGAAGGAGGGGACGGAGATCTGTTGCTGCAGCAGAGCAACCGAGAGGACCGGGTTTTGCAGTGGCTTCAAGCGCTTGATATGCAGGTTATGGGCGCGTGTCGTGCAGACGAGAGGTTGAAGCCTTTGCTGAAGATGAATGCTTCGAACGATGCCGCAGAAGGTCGGTTGCTGGCTCAGTTGACTCAGGCTGAGCGTTTGATGACTGTCTCAACAACCAGAATGACTGAGGATTCTGATGTTATATATAAGGCCAGGGATCTTATTGAAGCTTTGTCAGCTGATGTTCCGTTATCTATGATCTTGGATTCTGTTCTGGGACATAATGAAGCATTATTTGGGCGAGCTCAGTTTGAAGCCCTTGTCTCCATCCACAGCAAGGAGATTGCTTCAGAAGGACTCAAGCATAGAGTCTTTGAGACATCACTTGCTAACCTTCAGGGAGATGAGGTGCATGCTCATAGAAAAATGCGGTTGAGAGCTTCAAATGTCCAAGCATCATCCATGAGGCCACCCTCACAGCCTTGGTCTTCACCATTAACATCACAGTCAACCAGCTCTTGCTCGGACAAAGAAATCAGTTTACCAGTTGTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

27.61

Weight (kDa)

4.98

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 109 - 150 5.7e-06 Krr1 KH1 domain
Ribosomal_S3Ae PF01015 175 - 219 2e-06 Ribosomal S3Ae family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 232
AccII CGCG 1 cut(s) 254
AciI CCGC 3 cut(s) 139, 312, 628
AclWI GGATC 2 cut(s) 109, 423
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 3 cut(s) 308, 531, 578
AcyI GRCGYC 1 cut(s) 107
AfeI AGCGCT 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 79, 535
AgsI TTSAA 6 cut(s) 161, 227, 277, 425, 512, 642
AjnI CCWGG 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 477, 509
AluBI AGCT 6 cut(s) 90, 428, 437, 503, 638, 714
AluI AGCT 6 cut(s) 90, 428, 437, 503, 638, 714
Alw21I GWGCWC 2 cut(s) 92, 505
Alw26I GTCTC 4 cut(s) 22, 370, 526, 569
AlwI GGATC 2 cut(s) 109, 423
Aor51HI AGCGCT 1 cut(s) 231
AoxI GGCC 2 cut(s) 408, 665
ApeKI GCWGC 2 cut(s) 184, 187
ApoI RAATTY 1 cut(s) 53
AspLEI GCGC 2 cut(s) 232, 254
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 681
AsuII TTCGAA 1 cut(s) 302
AvaII GGWCC 1 cut(s) 205
BanII GRGCYC 2 cut(s) 92, 505
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 2 cut(s) 92, 505
BbvCI CCTCAGC 1 cut(s) 48
BbvI GCAGC 2 cut(s) 171, 199
BccI CCATC 1 cut(s) 533
BciT130I CCWGG 1 cut(s) 412
BciVI GTATCC 1 cut(s) 144
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 4 cut(s) 22, 370, 526, 569
BfmI CTRYAG 1 cut(s) 185
BfoI RGCGCY 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 232
BfuI GTATCC 1 cut(s) 144
BglII AGATCT 1 cut(s) 175
BisI GCNGC 3 cut(s) 185, 188, 312
BlpI GCTNAGC 1 cut(s) 348
BlsI GCNGC 3 cut(s) 186, 189, 313
Bme1390I CCNGG 2 cut(s) 209, 412
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmrFI CCNGG 2 cut(s) 209, 412
BmsI GCATC 2 cut(s) 298, 662
BpiI GAAGAC 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 348
Bpu14I TTCGAA 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 411, 680
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 535
Bse1I ACTGG 2 cut(s) 159, 743
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 2 cut(s) 411, 680
BseGI GGATG 2 cut(s) 525, 656
BseLI CCNNNNNNNGG 2 cut(s) 79, 535
BseMII CTCAG 6 cut(s) 39, 339, 347, 356, 375, 518
BseNI ACTGG 2 cut(s) 159, 743
BseXI GCAGC 2 cut(s) 171, 199
BsgI GTGCAG 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 2 cut(s) 410, 667
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 92, 505
BsiSI CCGG 1 cut(s) 208
BslFI GGGAC 2 cut(s) 182, 489
BslI CCNNNNNNNGG 2 cut(s) 79, 535
BsmAI GTCTC 4 cut(s) 22, 370, 526, 569
BsmFI GGGAC 2 cut(s) 182, 489
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 2 cut(s) 410, 667
Bso31I GGTCTC 1 cut(s) 22
Bsp119I TTCGAA 1 cut(s) 302
Bsp1286I GDGCHC 2 cut(s) 92, 505
Bsp143I GATC 5 cut(s) 34, 101, 175, 415, 456
Bsp1720I GCTNAGC 1 cut(s) 348
BspACI CCGC 3 cut(s) 139, 312, 628
BspANI GGCC 2 cut(s) 410, 667
BspCNI CTCAG 6 cut(s) 40, 340, 346, 355, 376, 517
BspFNI CGCG 1 cut(s) 254
BspMAI CTGCAG 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 2 cut(s) 109, 423
BspT104I TTCGAA 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 22
BsrI ACTGG 2 cut(s) 159, 743
BssECI CCNNGG 2 cut(s) 411, 680
BssMI GATC 5 cut(s) 34, 101, 175, 415, 456
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 680
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 2 cut(s) 364, 705
BstACI GRCGYC 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 302
BstC8I GCNNGC 3 cut(s) 330, 501, 612
BstDEI CTNAG 6 cut(s) 48, 333, 342, 348, 384, 504
BstF5I GGATG 2 cut(s) 525, 656
BstFNI CGCG 1 cut(s) 254
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 2 cut(s) 232, 254
BstKTI GATC 5 cut(s) 37, 104, 178, 418, 459
BstMAI GTCTC 4 cut(s) 22, 370, 526, 569
BstMBI GATC 5 cut(s) 34, 101, 175, 415, 456
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 5 cut(s) 136, 229, 238, 260, 434
BstNI CCWGG 1 cut(s) 412
BstNSI RCATGY 1 cut(s) 614
BstSCI CCNGG 2 cut(s) 207, 410
BstSFI CTRYAG 1 cut(s) 185
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 171, 199
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 2 cut(s) 175, 415
BstYI RGATCY 2 cut(s) 175, 415
BsuI GTATCC 1 cut(s) 144
BsuRI GGCC 2 cut(s) 410, 667
BtsCI GGATG 2 cut(s) 525, 656
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 224
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 3 cut(s) 330, 501, 612
CfoI GCGC 2 cut(s) 232, 254
Cfr13I GGNCC 1 cut(s) 205
CviAII CATG 2 cut(s) 611, 661
DdeI CTNAG 6 cut(s) 48, 333, 342, 348, 384, 504
DpnI GATC 5 cut(s) 36, 103, 177, 417, 458
DpnII GATC 5 cut(s) 34, 101, 175, 415, 456
Ecl136II GAGCTC 2 cut(s) 90, 503
Eco130I CCWWGG 1 cut(s) 680
Eco24I GRGCYC 2 cut(s) 92, 505
Eco31I GGTCTC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 205
Eco47III AGCGCT 1 cut(s) 231
Eco53kI GAGCTC 2 cut(s) 90, 503
Eco57I CTGAAG 3 cut(s) 308, 531, 578
EcoICRI GAGCTC 2 cut(s) 90, 503
EcoRI GAATTC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 680
EcoT38I GRGCYC 2 cut(s) 92, 505
ErhI CCWWGG 1 cut(s) 680
FaeI CATG 2 cut(s) 614, 664
FaqI GGGAC 2 cut(s) 182, 489
FatI CATG 2 cut(s) 610, 660
Fnu4HI GCNGC 3 cut(s) 185, 188, 312
FokI GGATG 2 cut(s) 512, 643
FriOI GRGCYC 2 cut(s) 92, 505
Fsp4HI GCNGC 3 cut(s) 185, 188, 312
GlaI GCGC 2 cut(s) 231, 253
GluI GCNGC 3 cut(s) 185, 188, 312
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 2 cut(s) 410, 667
HapII CCGG 1 cut(s) 208
HhaI GCGC 2 cut(s) 232, 254
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 2 cut(s) 614, 664
Hin6I GCGC 2 cut(s) 230, 252
HinP1I GCGC 2 cut(s) 230, 252
HincII GTYRAC 3 cut(s) 144, 339, 708
HindII GTYRAC 3 cut(s) 144, 339, 708
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 6 cut(s) 62, 340, 389, 464, 555, 567
HpaII CCGG 1 cut(s) 208
HphI GGTGA 1 cut(s) 681
Hpy166II GTNNAC 4 cut(s) 144, 339, 708, 740
Hpy188I TCNGA 3 cut(s) 394, 550, 724
Hpy188III TCNNGA 2 cut(s) 32, 85
Hpy8I GTNNAC 4 cut(s) 144, 339, 708, 740
Hpy99I CGWCG 3 cut(s) 109, 112, 115
HpyAV CCTTC 4 cut(s) 155, 311, 545, 602
HpyCH4III ACNGT 2 cut(s) 364, 705
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 5 cut(s) 187, 217, 241, 263, 610
HpyF10VI GCNNNNNNNGC 5 cut(s) 136, 229, 238, 260, 434
HpyF3I CTNAG 6 cut(s) 48, 333, 342, 348, 384, 504
HpySE526I ACGT 1 cut(s) 107
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 2 cut(s) 614, 664
HspAI GCGC 2 cut(s) 230, 252
Kzo9I GATC 5 cut(s) 34, 101, 175, 415, 456
LmnI GCTCC 1 cut(s) 87
Lsp1109I GCAGC 2 cut(s) 171, 199
LweI GCATC 2 cut(s) 298, 662
MaeII ACGT 1 cut(s) 107
MalI GATC 5 cut(s) 36, 103, 177, 417, 458
MboI GATC 5 cut(s) 34, 101, 175, 415, 456
MboII GAAGA 2 cut(s) 301, 678
MflI RGATCY 2 cut(s) 175, 415
MhlI GDGCHC 2 cut(s) 92, 505
MluCI AATT 2 cut(s) 11, 53
MlyI GAGTC 4 cut(s) 56, 334, 549, 576
MseI TTAA 1 cut(s) 695
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 2 cut(s) 209, 412
Mva1269I GAATGC 1 cut(s) 301
MvaI CCWGG 1 cut(s) 412
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 5 cut(s) 136, 229, 238, 260, 434
NciI CCSGG 1 cut(s) 209
NdeII GATC 5 cut(s) 34, 101, 175, 415, 456
NlaIII CATG 2 cut(s) 614, 664
NspI RCATGY 1 cut(s) 614
NspV TTCGAA 1 cut(s) 302
PaeI GCATGC 1 cut(s) 614
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 2 cut(s) 389, 464
PflFI GACNNNGTC 1 cut(s) 109
PkrI GCNGC 3 cut(s) 186, 189, 313
Ple19I CGATCG 1 cut(s) 37
PleI GAGTC 4 cut(s) 56, 334, 549, 575
PpsI GAGTC 4 cut(s) 56, 334, 549, 575
Psp124BI GAGCTC 2 cut(s) 92, 505
Psp6I CCWGG 1 cut(s) 410
PspGI CCWGG 1 cut(s) 410
PspPI GGNCC 1 cut(s) 205
PstI CTGCAG 1 cut(s) 189
PsuI RGATCY 2 cut(s) 175, 415
PsyI GACNNNGTC 1 cut(s) 109
PvuI CGATCG 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 437
SacI GAGCTC 2 cut(s) 92, 505
SaqAI TTAA 1 cut(s) 695
SatI GCNGC 3 cut(s) 185, 188, 312
Sau3AI GATC 5 cut(s) 34, 101, 175, 415, 456
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 4 cut(s) 56, 334, 549, 576
ScrFI CCNGG 2 cut(s) 209, 412
SduI GDGCHC 2 cut(s) 92, 505
SfaNI GCATC 2 cut(s) 298, 662
SfcI CTRYAG 1 cut(s) 185
SfuI TTCGAA 1 cut(s) 302
SinI GGWCC 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
SphI GCATGC 1 cut(s) 614
Sse9I AATT 2 cut(s) 11, 53
SsiI CCGC 3 cut(s) 139, 312, 628
SstI GAGCTC 2 cut(s) 92, 505
StyD4I CCNGG 2 cut(s) 207, 410
StyI CCWWGG 1 cut(s) 680
TaaI ACNGT 2 cut(s) 364, 705
TaiI ACGT 1 cut(s) 110
TaqI TCGA 3 cut(s) 57, 104, 302
TaqII GACCGA 1 cut(s) 27
TasI AATT 2 cut(s) 11, 53
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 2 cut(s) 389, 464
Tru1I TTAA 1 cut(s) 695
Tru9I TTAA 1 cut(s) 695
TscAI CASTG 1 cut(s) 224
TseI GCWGC 2 cut(s) 184, 187
TspDTI ATGAA 2 cut(s) 308, 498
TspGWI ACGGA 2 cut(s) 186, 435
TspRI CASTG 1 cut(s) 224
Tth111I GACNNNGTC 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 1 cut(s) 53
XceI RCATGY 1 cut(s) 614
ZraI GACGTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.