Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

68008421 .. 68008746

Gene Structure 326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG444400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGATAATTGAGCAGCAAGTGTTGACGGTGGCGAAGACGGTGGAGGACAAGCTTGACGAGGAAATCGCAGCCCTAGATCGGCTAGACGACTACTATCTGGAGGTGCTTAGAGATCGAATGCTCCAGCAGATGAAGAAGATGGTGGAGAAGCACAGCCGTTGGATCTCCCTTGGCCACGACGAGTACACGAATTCGGACCCGGCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

69

Amino Acids

8.16

Weight (kDa)

4.69

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	202
AclWI	GGATC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	190
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	2 cut(s)	13, 68
ApoI	RAATTY	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	25, 80
BccI	CCATC	1 cut(s)	133
BceAI	ACGGC	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	200
BfaI	CTAG	2 cut(s)	74, 83
BisI	GCNGC	2 cut(s)	14, 69
BlsI	GCNGC	2 cut(s)	15, 70
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	198, 204
BmrFI	CCNGG	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	41
BpmI	CTGGAG	2 cut(s)	107, 119
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	25, 80
BshFI	GGCC	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	76, 112, 162
BspANI	GGCC	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	198, 204
BspPI	GGATC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	76, 112, 162
BssT1I	CCWWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	28, 40
BstDEI	CTNAG	1 cut(s)	107
BstKTI	GATC	3 cut(s)	79, 115, 165
BstMBI	GATC	3 cut(s)	76, 112, 162
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	25, 80
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	184
CviJI	RGCY	5 cut(s)	52, 71, 82, 156, 174
CviKI_1	RGCY	5 cut(s)	52, 71, 82, 156, 174
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	3 cut(s)	78, 114, 164
DpnII	GATC	3 cut(s)	76, 112, 162
EaeI	YGGCCR	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaiI	YATR	1 cut(s)	208
Fnu4HI	GCNGC	2 cut(s)	14, 69
Fsp4HI	GCNGC	2 cut(s)	14, 69
FspBI	CTAG	2 cut(s)	74, 83
GluI	GCNGC	2 cut(s)	14, 69
GsuI	CTGGAG	2 cut(s)	107, 119
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	50
HpaII	CCGG	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	24, 186
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	2 cut(s)	24, 186
Hpy99I	CGWCG	1 cut(s)	182
HpyCH4III	ACNGT	2 cut(s)	28, 40
HpyF3I	CTNAG	1 cut(s)	107
Kzo9I	GATC	3 cut(s)	76, 112, 162
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	2 cut(s)	83, 137
Lsp1109I	GCAGC	2 cut(s)	25, 80
MaeI	CTAG	2 cut(s)	74, 83
MalI	GATC	3 cut(s)	78, 114, 164
MboI	GATC	3 cut(s)	76, 112, 162
MboII	GAAGA	3 cut(s)	46, 145, 148
MflI	RGATCY	1 cut(s)	162
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	2 cut(s)	6, 190
MluNI	TGGCCA	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	3 cut(s)	37, 52, 94
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	174
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	3 cut(s)	76, 112, 162
NlaIV	GGNNCC	2 cut(s)	198, 204
PctI	GAATGC	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	15, 70
PspN4I	GGNNCC	2 cut(s)	198, 204
PspPI	GGNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	162
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SatI	GCNGC	2 cut(s)	14, 69
Sau3AI	GATC	3 cut(s)	76, 112, 162
Sau96I	GGNCC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	2 cut(s)	54, 105
SinI	GGWCC	1 cut(s)	196
Sse9I	AATT	2 cut(s)	6, 190
SspMI	CTAG	2 cut(s)	74, 83
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	28, 40
TaqI	TCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	6, 190
TatI	WGTACW	1 cut(s)	183
TseI	GCWGC	2 cut(s)	13, 68
TspDTI	ATGAA	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	190
XspI	CTAG	2 cut(s)	74, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.