Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

61878116 .. 61878586

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG435000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTCTGCTTGCGAATTCGCTCCCCTCCGGATTCCAATTCCATTGCCATCTTCAACAAAATCTCACCCAGATCAACCTTCTTTCTCCCTCTCCCTCTCCTTCTCTCAAATCTCATTTCCTTCATTTGAATCAAACTTTCTGCATATCCATCTAATCCAACAATGGCGAACTGTCCAAGAGATAATTGAGCAGCAAGTGTTGATGGTGGCGAAGACGGTGGATGACAAGCTCGACGAGGAAATCGCAGCCCTAGATCGGCTGGAGGCGCACAGAGATCGAATGCTCCAGCAGATCAAGAAGATGGCGGAGAAGCGCAGCTGTTGGATCTCCCTTGGCCACGGCGAGTACAAGGATTCGAACCCGACACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

123

Amino Acids

14.12

Weight (kDa)

5.92

Isoelectric Point (pI)

64.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	54, 128
AluBI	AGCT	2 cut(s)	229, 318
AluI	AGCT	2 cut(s)	229, 318
AlwI	GGATC	1 cut(s)	332
Aor13HI	TCCGGA	1 cut(s)	27
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	3 cut(s)	190, 245, 315
ApoI	RAATTY	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	268, 315
AsuHPI	GGTGA	1 cut(s)	56
AsuII	TTCGAA	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	202, 257, 327
BccI	CCATC	4 cut(s)	55, 156, 196, 295
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	3 cut(s)	191, 246, 316
BlsI	GCNGC	3 cut(s)	192, 247, 317
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	2 cut(s)	269, 281
Bpu14I	TTCGAA	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	331, 337
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	41
BseAI	TCCGGA	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	331, 337
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMI	GCAATG	1 cut(s)	41
BseXI	GCAGC	3 cut(s)	202, 257, 327
BshFI	GGCC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	336
Bsp119I	TTCGAA	1 cut(s)	356
Bsp13I	TCCGGA	1 cut(s)	27
Bsp143I	GATC	5 cut(s)	70, 253, 274, 291, 324
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	1 cut(s)	336
BspEI	TCCGGA	1 cut(s)	27
BspPI	GGATC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	331, 337
BssMI	GATC	5 cut(s)	70, 253, 274, 291, 324
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	172, 217
BstBI	TTCGAA	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	10
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	268, 315
BstKTI	GATC	5 cut(s)	73, 256, 277, 294, 327
BstMBI	GATC	5 cut(s)	70, 253, 274, 291, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	265
BstV1I	GCAGC	3 cut(s)	202, 257, 327
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	2 cut(s)	268, 315
Csp6I	GTAC	1 cut(s)	346
CviJI	RGCY	5 cut(s)	229, 248, 259, 318, 336
CviKI_1	RGCY	5 cut(s)	229, 248, 259, 318, 336
CviQI	GTAC	1 cut(s)	346
DpnI	GATC	5 cut(s)	72, 255, 276, 293, 326
DpnII	GATC	5 cut(s)	70, 253, 274, 291, 324
EaeI	YGGCCR	1 cut(s)	334
EciI	GGCGGA	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	331
FaiI	YATR	2 cut(s)	144, 370
Fnu4HI	GCNGC	3 cut(s)	191, 246, 316
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	3 cut(s)	191, 246, 316
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	2 cut(s)	267, 314
GluI	GCNGC	3 cut(s)	191, 246, 316
GsuI	CTGGAG	2 cut(s)	269, 281
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	1 cut(s)	28
HhaI	GCGC	2 cut(s)	268, 315
Hin6I	GCGC	2 cut(s)	266, 313
HinP1I	GCGC	2 cut(s)	266, 313
HinfI	GANTC	3 cut(s)	31, 128, 353
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	28, 295
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	3 cut(s)	87, 109, 129
HpyCH4III	ACNGT	2 cut(s)	172, 217
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	265
HspAI	GCGC	2 cut(s)	266, 313
Kpn2I	TCCGGA	1 cut(s)	27
Kzo9I	GATC	5 cut(s)	70, 253, 274, 291, 324
LmnI	GCTCC	2 cut(s)	25, 288
LpnPI	CCDG	4 cut(s)	41, 81, 245, 299
Lsp1109I	GCAGC	3 cut(s)	202, 257, 327
MaeI	CTAG	1 cut(s)	251
MalI	GATC	5 cut(s)	72, 255, 276, 293, 326
MboI	GATC	5 cut(s)	70, 253, 274, 291, 324
MboII	GAAGA	3 cut(s)	42, 223, 310
MflI	RGATCY	1 cut(s)	324
MlsI	TGGCCA	1 cut(s)	336
MluCI	AATT	3 cut(s)	14, 36, 183
MluNI	TGGCCA	1 cut(s)	336
MmeI	TCCRAC	2 cut(s)	181, 302
MnlI	CCTC	5 cut(s)	35, 98, 104, 229, 256
Mox20I	TGGCCA	1 cut(s)	336
MroI	TCCGGA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	265
NdeII	GATC	5 cut(s)	70, 253, 274, 291, 324
NspV	TTCGAA	1 cut(s)	356
PctI	GAATGC	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	31, 128, 353
PkrI	GCNGC	3 cut(s)	192, 247, 317
PsuI	RGATCY	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	318
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SatI	GCNGC	3 cut(s)	191, 246, 316
Sau3AI	GATC	5 cut(s)	70, 253, 274, 291, 324
SetI	ASST	3 cut(s)	79, 231, 320
SfuI	TTCGAA	1 cut(s)	356
Sse9I	AATT	3 cut(s)	14, 36, 183
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	172, 217
TaqI	TCGA	3 cut(s)	231, 277, 356
TasI	AATT	3 cut(s)	14, 36, 183
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	3 cut(s)	31, 128, 353
TseI	GCWGC	3 cut(s)	190, 245, 315
TspDTI	ATGAA	1 cut(s)	111
XapI	RAATTY	1 cut(s)	14
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.