Rorug06G0061600

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
8245419 .. 8247143
1725 bp
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UTR
Exon/CDS
Intron
Rorug06G0061600.1

Sequence Viewer

Length: 399 bp
ATGAGTGCAAGTAGCTTGGTTGCAGAGGCAGTCTGGAAGGCCATTGAATCAGCTGGTTCAGTGACCGATGAACAGCTTTCCATGTTGCATTTCTTGTTTGGTAAGAACTTGGAGCGAGCGACTAGGATAGTCGATCAAAGAGGTGTCAAGAGGATTTTCGGTGAGCCCAGTGGACGTTCTATATTTCAGGTTGTAGGAGAATCCCGAAGGAAGGAGGAGTACTTTTGTTTTGCTGAACACTATTGCGCTTGTTATTCATTCTTCTATGACATTGTAAACAGAGGAGAGCAGCTTTGTTGTAAGCATCAGTTGGCTGCAAGACTTGCTGCAGCATTGGGAGCATGCATTGAAGATAAGGTATCTGATGAGCAGTTAGCTCTACTGCTTTCCAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.77

Weight (kDa)

6.29

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 2 cut(s) 47, 350
AluBI AGCT 6 cut(s) 15, 53, 76, 292, 377, 394
AluI AGCT 6 cut(s) 15, 53, 76, 292, 377, 394
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 4 cut(s) 289, 314, 326, 329
AspLEI GCGC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 173
BanII GRGCYC 1 cut(s) 168
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BbvI GCAGC 4 cut(s) 301, 301, 313, 341
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 327
BisI GCNGC 4 cut(s) 290, 315, 327, 330
BlsI GCNGC 4 cut(s) 291, 316, 328, 331
BmcAI AGTACT 1 cut(s) 221
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 2 cut(s) 230, 297
BseXI GCAGC 4 cut(s) 301, 301, 313, 341
BshFI GGCC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 211
BsnI GGCC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 1 cut(s) 133
BspANI GGCC 1 cut(s) 41
BspMAI CTGCAG 1 cut(s) 331
BsrI ACTGG 1 cut(s) 168
BssMI GATC 1 cut(s) 133
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 117, 343
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 3 cut(s) 323, 338, 391
BstNSI RCATGY 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 327
BstV1I GCAGC 4 cut(s) 301, 301, 313, 341
BsuRI GGCC 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 66, 175
Cac8I GCNNGC 2 cut(s) 117, 343
CfoI GCGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 220
CviAII CATG 2 cut(s) 82, 342
CviJI RGCY 9 cut(s) 15, 41, 53, 76, 166, 292, 314, 377, 394
CviKI_1 RGCY 9 cut(s) 15, 41, 53, 76, 166, 292, 314, 377, 394
CviQI GTAC 1 cut(s) 220
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 2 cut(s) 85, 345
FaiI YATR 5 cut(s) 83, 182, 267, 343, 397
FatI CATG 2 cut(s) 81, 341
Fnu4HI GCNGC 4 cut(s) 290, 315, 327, 330
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 4 cut(s) 290, 315, 327, 330
FspBI CTAG 1 cut(s) 123
GlaI GCGC 1 cut(s) 247
GluI GCNGC 4 cut(s) 290, 315, 327, 330
HaeIII GGCC 1 cut(s) 41
HhaI GCGC 1 cut(s) 248
Hin1II CATG 2 cut(s) 85, 345
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 2 cut(s) 47, 200
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 173, 277
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 3 cut(s) 34, 148, 204
Hpy8I GTNNAC 2 cut(s) 173, 277
HpyAV CCTTC 3 cut(s) 31, 201, 205
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 6 cut(s) 8, 23, 88, 317, 329, 345
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 338, 391
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 2 cut(s) 85, 345
HspAI GCGC 1 cut(s) 246
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 2 cut(s) 112, 338
LpnPI CCDG 4 cut(s) 19, 39, 173, 181
Lsp1109I GCAGC 4 cut(s) 301, 301, 313, 341
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 2 cut(s) 253, 362
MhlI GDGCHC 1 cut(s) 168
MnlI CCTC 5 cut(s) 19, 134, 144, 208, 275
Mph1103I ATGCAT 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 53
MwoI GCNNNNNNNGC 3 cut(s) 323, 338, 391
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 85, 345
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 347
NspI RCATGY 1 cut(s) 345
PaeI GCATGC 1 cut(s) 345
PfeI GAWTC 2 cut(s) 47, 200
PkrI GCNGC 4 cut(s) 291, 316, 328, 331
PstI CTGCAG 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SatI GCNGC 4 cut(s) 290, 315, 327, 330
Sau3AI GATC 1 cut(s) 133
ScaI AGTACT 1 cut(s) 221
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 1 cut(s) 327
SphI GCATGC 1 cut(s) 345
SspMI CTAG 1 cut(s) 123
TaiI ACGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 132
TaqII GACCGA 1 cut(s) 80
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 2 cut(s) 47, 200
TscAI CASTG 2 cut(s) 66, 175
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 4 cut(s) 289, 314, 326, 329
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 84, 246
TspRI CASTG 2 cut(s) 66, 175
XceI RCATGY 1 cut(s) 345
XspI CTAG 1 cut(s) 123
ZrmI AGTACT 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.