Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Reverse (-)

15545141 .. 15572016

Gene Structure 26876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG192200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTCAGATTGGAGAGCTTGATTGGCCTCGTCAACCGAACCCAGCGCGCCTGCACCACCCTCGGTGATCACGGCGGCGAGGGCATGTCCCTCTGGGAAGCTCTCCCTTCTGTCGCCGTCGTCAGAGGCCAGGATACCCATCTGGAGGCACCTGAAGAGTTCTCGAAGAAGGCTACACTGTTCTTTGCTCATGTTGCTGATAAGTTTTATGCCAAAGTCAATGATGATGTTTATTTAAATATTGGAGCTGCACTTGCAACTCATTTAGACAAGCCTCGTGTTTATATTGGGTGCATGCAGTCGGGCGAAGTTTTCTCTGAGCTGTTCTTGACCGTGGTGAGAAGATTGAGTTGTTGGTGGATAAGATTGATAACGCAGATTCTTACGAGTGATTGTAATAGCGGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

136

Amino Acids

15.13

Weight (kDa)

5.77

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	148
AccII	CGCG	1 cut(s)	48
AciI	CCGC	2 cut(s)	75, 402
AcuI	CTGAAG	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	4 cut(s)	18, 101, 248, 322
AluI	AGCT	4 cut(s)	18, 101, 248, 322
AoxI	GGCC	2 cut(s)	25, 127
ApeKI	GCWGC	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	48, 50
AsuHPI	GGTGA	2 cut(s)	77, 349
BanI	GGYRCC	1 cut(s)	148
BauI	CACGAG	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	147
BceAI	ACGGC	2 cut(s)	88, 101
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	131
BciVI	GTATCC	1 cut(s)	127
BclI	TGATCA	1 cut(s)	67
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	76, 249
BlsI	GCNGC	2 cut(s)	77, 250
Bme1390I	CCNGG	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	61, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	61, 333
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	309
BsePI	GCGCGC	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	235
BseYI	CCCAGC	1 cut(s)	42
BsgI	GTGCAG	2 cut(s)	37, 234
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	27, 129
BshNI	GGYRCC	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	27, 129
Bsp143I	GATC	1 cut(s)	67
BspACI	CCGC	2 cut(s)	75, 402
BspANI	GGCC	2 cut(s)	27, 129
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	61, 333
BssHII	GCGCGC	1 cut(s)	46
BssMI	GATC	1 cut(s)	67
BssSI	CACGAG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	180, 334
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	48, 52, 296
BstDEI	CTNAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	333
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	2 cut(s)	48, 50
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 81, 194, 254
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	2 cut(s)	88, 298
BstSCI	CCNGG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	27, 129
BtgI	CCRYGG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	176
Cac8I	GCNNGC	3 cut(s)	48, 52, 296
CfoI	GCGC	2 cut(s)	48, 50
CviAII	CATG	3 cut(s)	85, 191, 295
CviJI	RGCY	8 cut(s)	18, 27, 101, 129, 173, 248, 274, 322
CviKI_1	RGCY	8 cut(s)	18, 27, 101, 129, 173, 248, 274, 322
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
DraI	TTTAAA	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	3 cut(s)	88, 194, 298
FaiI	YATR	5 cut(s)	86, 192, 210, 285, 296
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	3 cut(s)	84, 190, 294
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	76, 249
Fsp4HI	GCNGC	2 cut(s)	76, 249
GlaI	GCGC	2 cut(s)	47, 49
GluI	GCNGC	2 cut(s)	76, 249
GsaI	CCCAGC	1 cut(s)	46
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	27, 129
HhaI	GCGC	2 cut(s)	48, 50
Hin1II	CATG	3 cut(s)	88, 194, 298
Hin6I	GCGC	2 cut(s)	46, 48
HinP1I	GCGC	2 cut(s)	46, 48
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	379
HphI	GGTGA	2 cut(s)	77, 349
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	8, 125, 319
Hpy188III	TCNNGA	3 cut(s)	143, 163, 328
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	117, 163
HpyCH4III	ACNGT	2 cut(s)	180, 334
HpyCH4V	TGCA	5 cut(s)	54, 251, 257, 294, 298
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 81, 194, 254
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	88, 194, 298
HspAI	GCGC	2 cut(s)	46, 48
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	7 cut(s)	56, 64, 79, 116, 128, 143, 165
Lsp1109I	GCAGC	1 cut(s)	235
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	3 cut(s)	167, 178, 354
MnlI	CCTC	7 cut(s)	38, 71, 73, 101, 119, 139, 285
MseI	TTAA	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	4 cut(s)	24, 81, 194, 254
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	3 cut(s)	88, 194, 298
NlaIV	GGNNCC	1 cut(s)	150
NspI	RCATGY	2 cut(s)	88, 298
PaeI	GCATGC	1 cut(s)	298
PauI	GCGCGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	77, 250
Psp6I	CCWGG	1 cut(s)	129
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	150
PteI	GCGCGC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	2 cut(s)	76, 249
Sau3AI	GATC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	5 cut(s)	20, 103, 154, 250, 324
SmiI	ATTTAAAT	1 cut(s)	237
SphI	GCATGC	1 cut(s)	298
SsiI	CCGC	2 cut(s)	75, 402
SspI	AATATT	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	129
SwaI	ATTTAAAT	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	180, 334
TaqI	TCGA	1 cut(s)	164
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	1 cut(s)	248
TspRI	CASTG	1 cut(s)	183
XceI	RCATGY	2 cut(s)	88, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.