Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

53979899 .. 53981519

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003886

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAGTTGCATTTGCAGGGATTGCTTGGGTGGCATGTTACCCGGGCCGCGGCCACACTACCCCTCGATGCCCCGACACCCGAAAGGTACGTCTCCAGAAGCAACGAGGAAGGCCAGGGGTTCTGAGGTGAAGGCCTTGTTCTCTGTGGTTGGAATGACATGTGCCGGGTCTGTGGAGAAGGCGGTGAAGCGGCTCCCGGGGATACAGGGGGCCGCCGTGGACGTGTTGAACAACACAGCCCTTGTTCGCTACTATCCCAGCTTCGTCAATGAGGACAAAATATGTGAGGCTATTAAAGGCGCTGGATTTGAAGCTAAACTGATTAAGCTGGAGATGAATGACAAAACCATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

119

Amino Acids

12.74

Weight (kDa)

9.06

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	47 - 104	3e-10	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	49
AciI	CCGC	5 cut(s)	47, 49, 182, 190, 213
AcoI	YGGCCR	1 cut(s)	50
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	48
AflIII	ACRYGT	2 cut(s)	158, 222
AgsI	TTSAA	2 cut(s)	229, 311
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	3 cut(s)	261, 314, 328
AluI	AGCT	3 cut(s)	261, 314, 328
Alw26I	GTCTC	1 cut(s)	96
Ama87I	CYCGRG	2 cut(s)	41, 196
AoxI	GGCC	5 cut(s)	44, 50, 111, 132, 210
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	44, 210
AsuC2I	CCSGG	5 cut(s)	42, 43, 166, 197, 198
AsuHPI	GGTGA	2 cut(s)	139, 196
AvaI	CYCGRG	2 cut(s)	41, 196
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	115
BciVI	GTATCC	1 cut(s)	195
BcnI	CCSGG	5 cut(s)	42, 43, 166, 197, 198
BcoDI	GTCTC	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	303
BfuI	GTATCC	1 cut(s)	195
BisI	GCNGC	4 cut(s)	47, 50, 191, 213
BlsI	GCNGC	4 cut(s)	48, 51, 192, 214
Bme1390I	CCNGG	6 cut(s)	42, 43, 115, 166, 197, 198
BmeT110I	CYCGRG	2 cut(s)	41, 196
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	44, 210
BmiI	GGNNCC	2 cut(s)	194, 211
BmrFI	CCNGG	6 cut(s)	42, 43, 115, 166, 197, 198
BmsI	GCATC	1 cut(s)	57
BpmI	CTGGAG	2 cut(s)	78, 350
BpuMI	CCSGG	5 cut(s)	42, 43, 166, 197, 198
BsaJI	CCNNGG	7 cut(s)	41, 47, 114, 196, 197, 216, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	7 cut(s)	41, 47, 114, 196, 197, 216, 348
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	114
BseYI	CCCAGC	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	5 cut(s)	46, 52, 113, 134, 212
BsiHKCI	CYCGRG	2 cut(s)	41, 196
BsiSI	CCGG	3 cut(s)	42, 165, 197
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsnI	GGCC	5 cut(s)	46, 52, 113, 134, 212
BsoBI	CYCGRG	2 cut(s)	41, 196
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	5 cut(s)	47, 49, 182, 190, 213
BspANI	GGCC	5 cut(s)	46, 52, 113, 134, 212
BspCNI	CTCAG	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	194, 211
BssECI	CCNNGG	7 cut(s)	41, 47, 114, 196, 197, 216, 348
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	3 cut(s)	47, 216, 348
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstMAI	GTCTC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 30
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	2 cut(s)	37, 162
BstSCI	CCNGG	6 cut(s)	40, 41, 113, 164, 195, 196
BstUI	CGCG	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	5 cut(s)	46, 52, 113, 134, 212
BtgI	CCRYGG	3 cut(s)	47, 216, 348
BtrI	CACGTC	1 cut(s)	223
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	44, 210
Cfr42I	CCGCGG	1 cut(s)	50
Cfr9I	CCCGGG	2 cut(s)	41, 196
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	3 cut(s)	34, 159, 349
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	348
Eco147I	AGGCCT	1 cut(s)	134
Eco88I	CYCGRG	2 cut(s)	41, 196
EcoRII	CCWGG	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	3 cut(s)	37, 162, 352
FaiI	YATR	4 cut(s)	35, 160, 283, 350
FatI	CATG	3 cut(s)	33, 158, 348
Fnu4HI	GCNGC	4 cut(s)	47, 50, 191, 213
Fsp4HI	GCNGC	4 cut(s)	47, 50, 191, 213
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	4 cut(s)	47, 50, 191, 213
GsaI	CCCAGC	1 cut(s)	261
GsuI	CTGGAG	2 cut(s)	78, 350
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	5 cut(s)	46, 52, 113, 134, 212
HapII	CCGG	3 cut(s)	42, 165, 197
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	37, 162, 352
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HpaII	CCGG	3 cut(s)	42, 165, 197
HphI	GGTGA	2 cut(s)	139, 196
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	3 cut(s)	103, 124, 172
HpyCH4IV	ACGT	2 cut(s)	89, 222
HpyCH4V	TGCA	2 cut(s)	9, 15
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 30
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	2 cut(s)	89, 222
Hsp92II	CATG	3 cut(s)	37, 162, 352
HspAI	GCGC	1 cut(s)	300
KspI	CCGCGG	1 cut(s)	50
LmnI	GCTCC	1 cut(s)	198
LweI	GCATC	1 cut(s)	57
MaeII	ACGT	2 cut(s)	89, 222
MaeIII	GTNAC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	5 cut(s)	73, 99, 118, 265, 280
MseI	TTAA	2 cut(s)	294, 324
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	3 cut(s)	42, 165, 197
MspR9I	CCNGG	6 cut(s)	42, 43, 115, 166, 197, 198
MvaI	CCWGG	1 cut(s)	115
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	21, 30
NciI	CCSGG	5 cut(s)	42, 43, 166, 197, 198
NcoI	CCATGG	1 cut(s)	348
NlaIII	CATG	3 cut(s)	37, 162, 352
NlaIV	GGNNCC	2 cut(s)	194, 211
NspI	RCATGY	2 cut(s)	37, 162
PceI	AGGCCT	1 cut(s)	134
PciI	ACATGT	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	48, 51, 192, 214
PscI	ACATGT	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	194, 211
PspPI	GGNCC	2 cut(s)	44, 210
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SacII	CCGCGG	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	294, 324
SatI	GCNGC	4 cut(s)	47, 50, 191, 213
Sau96I	GGNCC	2 cut(s)	44, 210
ScrFI	CCNGG	6 cut(s)	42, 43, 115, 166, 197, 198
SetI	ASST	7 cut(s)	88, 92, 129, 225, 263, 316, 330
SfaNI	GCATC	1 cut(s)	57
Sfr303I	CCGCGG	1 cut(s)	50
SgrBI	CCGCGG	1 cut(s)	50
SmaI	CCCGGG	2 cut(s)	43, 198
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	5 cut(s)	47, 49, 182, 190, 213
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	6 cut(s)	40, 41, 113, 164, 195, 196
StyI	CCWWGG	1 cut(s)	348
TaiI	ACGT	2 cut(s)	92, 225
TaqI	TCGA	1 cut(s)	65
TauI	GCSGC	4 cut(s)	49, 52, 193, 215
Tru1I	TTAA	2 cut(s)	294, 324
Tru9I	TTAA	2 cut(s)	294, 324
TspDTI	ATGAA	1 cut(s)	350
TspMI	CCCGGG	2 cut(s)	41, 196
XceI	RCATGY	2 cut(s)	37, 162
XmaI	CCCGGG	2 cut(s)	41, 196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.