Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Reverse (-)

4769158 .. 4770043

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54752

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGTTGCTGATAAATGTTCTGGGAACTGCACTTGCAACTCTTTTAGACAAGCCTTGCGTTTATATTGGGTGCATGAAGTCGGGCGAAGTTTTCTCTGAGCTGTGGCATGAACCAGAATGGTGGAAGTTTGGGAGTAGAAGGGAGGATGATTGGATGTTGTTTGGTTTAGGGATTTGGAAGGTTCTACATTTGGTAAGTGATTTTCAGATCTGGGGTAGCTGGACCTCATTTGTGTCTTGCAATTTGTTAAGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

85

Amino Acids

9.83

Weight (kDa)

5.11

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	3 cut(s)	100, 219, 252
AluI	AGCT	3 cut(s)	100, 219, 252
AspS9I	GGNCC	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	222
BglII	AGATCT	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BseGI	GGATG	2 cut(s)	151, 159
BseMII	CTCAG	1 cut(s)	87
BsgI	GTGCAG	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	88
BssMI	GATC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	151, 159
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	207
BstXI	CCANNNNNNTGG	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	151, 159
Cfr13I	GGNCC	1 cut(s)	222
CviAII	CATG	2 cut(s)	73, 107
CviJI	RGCY	4 cut(s)	52, 100, 219, 252
CviKI_1	RGCY	4 cut(s)	52, 100, 219, 252
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	222
FaeI	CATG	2 cut(s)	76, 110
FaiI	YATR	4 cut(s)	63, 74, 108, 256
FatI	CATG	2 cut(s)	72, 106
FokI	GGATG	2 cut(s)	158, 166
Hin1II	CATG	2 cut(s)	76, 110
Hpy188I	TCNGA	2 cut(s)	97, 207
HpyAV	CCTTC	2 cut(s)	132, 172
HpyCH4V	TGCA	4 cut(s)	29, 35, 72, 240
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	76, 110
Kzo9I	GATC	1 cut(s)	207
LpnPI	CCDG	4 cut(s)	5, 126, 196, 205
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MflI	RGATCY	1 cut(s)	207
MluCI	AATT	1 cut(s)	241
MnlI	CCTC	2 cut(s)	136, 235
MseI	TTAA	1 cut(s)	248
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	2 cut(s)	76, 110
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	248
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	222
SetI	ASST	5 cut(s)	102, 183, 221, 227, 254
SinI	GGWCC	1 cut(s)	222
Sse9I	AATT	1 cut(s)	241
TasI	AATT	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	89, 123
VpaK11BI	GGWCC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.