Rh1AG416400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000840
Physical Location & Seq
Reverse (-)
64840509 .. 64842790
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG416400.1

Sequence Viewer

Length: 789 bp
ATGAATGCACAGACGACTTCGAGGCAACTTGCTGATAGGAAGGTGGAGGGGTTCGAGAAGAACATAACCAAGAGAGGTGCGGTCTCCTACTACTTTCCCGATCGGTCAAACGCCGAGGAATTCGAGGACTCGTCTGCCGCGAACGAGGTCGGGAGCTCCGGCGAGGGATCGACGTCGTCGGGGAGTGAGATTGGGCTGGAAGAGCTGTTGACAGGGATACTGGTTGAAGAAGGGGACGGAGATCTGTTGCTGCAGCAGAGCAACCGAGAGGACCGGGTTTTGCAGTGGCTTCAAGCGCTTGATATGCAGGTTATGGGCGCGTGTCGCGTAGACGAGAGGTTGAAGCCTTTGCTGAAGATGAATGCTTCGAACGATGCCGCAGAAGGTCGGTTGCTGGCTCAGTTGACTCAGCATTTTGAGCCAGCGAAAGTTGGAATGCTAGCGAGGTGCTTCTGCATACCACTTGTTTCTGTTCGTGTTGGAAAGATCAACAAGCAAGGGATTTTGTTGTGCCCTACCAATTCAAAATGTAAGATGTCCATATTTATTTATTTTGCATGTTTAGTTGAATCAGAAATGAACTTGGATACCCATGTGGAGGCACCTGAAGAGTTCTCAAAGAAGGCTACACCGTTCTTTGCTCATGTTGCTGATAAGTTTTATGCCAAAGTCAATGATGATGTTTATTTAAATATTGATGTTCTGGGAGCTGCACTTGCAACTCATTTAGACAAGCCTTGCATTTATATTGGGTGCATGCAGTCGGGCGAAGTTTTCTCTGAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

28.88

Weight (kDa)

4.87

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 601
AccI GTMKAC 1 cut(s) 330
AccII CGCG 3 cut(s) 140, 320, 327
AciI CCGC 3 cut(s) 80, 138, 378
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 374, 627
AcyI GRCGYC 1 cut(s) 173
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 598
AgsI TTSAA 5 cut(s) 227, 293, 343, 525, 569
AluBI AGCT 4 cut(s) 156, 205, 710, 784
AluI AGCT 4 cut(s) 156, 205, 710, 784
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 1 cut(s) 175
Aor51HI AGCGCT 1 cut(s) 297
ApeKI GCWGC 3 cut(s) 250, 253, 710
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 2 cut(s) 298, 320
AspS9I GGNCC 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 275
AsuII TTCGAA 1 cut(s) 368
AsuNHI GCTAGC 1 cut(s) 439
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 515
BaeI ACNNNNGTAYC 2 cut(s) 579, 612
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 237, 265, 697
BciVI GTATCC 2 cut(s) 210, 580
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 440
BfmI CTRYAG 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 298
BfuI GTATCC 2 cut(s) 210, 580
BglII AGATCT 1 cut(s) 241
BisI GCNGC 5 cut(s) 138, 251, 254, 378, 711
BlsI GCNGC 5 cut(s) 139, 252, 255, 379, 712
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 364
BmtI GCTAGC 1 cut(s) 443
Bpu14I TTCGAA 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 598
Bse1I ACTGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 598
BseMII CTCAG 3 cut(s) 413, 422, 771
BseNI ACTGG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 515
BseXI GCAGC 3 cut(s) 237, 265, 697
BsgI GTGCAG 1 cut(s) 696
Bsh1236I CGCG 3 cut(s) 140, 320, 327
Bsh1285I CGRYCG 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 601
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 2 cut(s) 159, 274
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 598
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 3 cut(s) 10, 367, 441
Bso31I GGTCTC 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 158, 515
Bsp143I GATC 4 cut(s) 100, 167, 241, 486
BspACI CCGC 3 cut(s) 80, 138, 378
BspCNI CTCAG 3 cut(s) 412, 421, 772
BspFNI CGCG 3 cut(s) 140, 320, 327
BspLI GGNNCC 1 cut(s) 603
BspMAI CTGCAG 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 298
BspOI GCTAGC 1 cut(s) 443
BspPI GGATC 1 cut(s) 175
BspQI GCTCTTC 1 cut(s) 195
BspT104I TTCGAA 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 601
BspTNI GGTCTC 1 cut(s) 88
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 4 cut(s) 100, 167, 241, 486
BssNI GRCGYC 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 633
Bst6I CTCTTC 2 cut(s) 195, 603
BstACI GRCGYC 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 4 cut(s) 396, 423, 441, 758
BstDEI CTNAG 3 cut(s) 399, 408, 780
BstFNI CGCG 3 cut(s) 140, 320, 327
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 2 cut(s) 298, 320
BstKTI GATC 4 cut(s) 103, 170, 244, 489
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 4 cut(s) 100, 167, 241, 486
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 7 cut(s) 202, 295, 304, 324, 418, 647, 716
BstNSI RCATGY 2 cut(s) 561, 760
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 251
BstSLI GKGCMC 1 cut(s) 515
BstUI CGCG 3 cut(s) 140, 320, 327
BstV1I GCAGC 3 cut(s) 237, 265, 697
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuI GTATCC 2 cut(s) 210, 580
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 4 cut(s) 396, 423, 441, 758
CfoI GCGC 2 cut(s) 298, 320
Cfr13I GGNCC 1 cut(s) 271
CviAII CATG 4 cut(s) 558, 593, 644, 757
DdeI CTNAG 3 cut(s) 399, 408, 780
DpnI GATC 4 cut(s) 102, 169, 243, 488
DpnII GATC 4 cut(s) 100, 167, 241, 486
DraI TTTAAA 1 cut(s) 690
Eam1104I CTCTTC 2 cut(s) 195, 603
EarI CTCTTC 2 cut(s) 195, 603
Ecl136II GAGCTC 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 271
Eco47III AGCGCT 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 156
Eco57I CTGAAG 2 cut(s) 374, 627
EcoICRI GAGCTC 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 158
FaeI CATG 4 cut(s) 561, 596, 647, 760
FaqI GGGAC 1 cut(s) 248
FatI CATG 4 cut(s) 557, 592, 643, 756
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 5 cut(s) 138, 251, 254, 378, 711
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 5 cut(s) 138, 251, 254, 378, 711
FspBI CTAG 1 cut(s) 440
GlaI GCGC 2 cut(s) 297, 319
GluI GCNGC 5 cut(s) 138, 251, 254, 378, 711
HaeII RGCGCY 1 cut(s) 299
HapII CCGG 2 cut(s) 159, 274
HhaI GCGC 2 cut(s) 298, 320
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 4 cut(s) 561, 596, 647, 760
Hin6I GCGC 2 cut(s) 296, 318
HinP1I GCGC 2 cut(s) 296, 318
HincII GTYRAC 2 cut(s) 210, 405
HindII GTYRAC 2 cut(s) 210, 405
HinfI GANTC 3 cut(s) 128, 406, 569
HpaII CCGG 2 cut(s) 159, 274
Hpy166II GTNNAC 3 cut(s) 210, 331, 405
Hpy188I TCNGA 2 cut(s) 574, 781
Hpy188III TCNNGA 3 cut(s) 55, 98, 151
Hpy8I GTNNAC 3 cut(s) 210, 331, 405
Hpy99I CGWCG 3 cut(s) 175, 178, 181
HpyAV CCTTC 4 cut(s) 34, 224, 377, 616
HpyCH4III ACNGT 1 cut(s) 633
HpyCH4IV ACGT 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 7 cut(s) 202, 295, 304, 324, 418, 647, 716
HpyF3I CTNAG 3 cut(s) 399, 408, 780
HpySE526I ACGT 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 4 cut(s) 561, 596, 647, 760
HspAI GCGC 2 cut(s) 296, 318
Kzo9I GATC 4 cut(s) 100, 167, 241, 486
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 3 cut(s) 153, 161, 707
Lsp1109I GCAGC 3 cut(s) 237, 265, 697
LweI GCATC 1 cut(s) 364
MaeI CTAG 1 cut(s) 440
MaeII ACGT 1 cut(s) 173
MalI GATC 4 cut(s) 102, 169, 243, 488
MboI GATC 4 cut(s) 100, 167, 241, 486
MboII GAAGA 5 cut(s) 70, 212, 239, 367, 620
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 2 cut(s) 158, 515
MluCI AATT 2 cut(s) 119, 520
MlyI GAGTC 2 cut(s) 122, 400
MmeI TCCRAC 2 cut(s) 412, 460
MseI TTAA 1 cut(s) 689
MspI CCGG 2 cut(s) 159, 274
MspR9I CCNGG 1 cut(s) 275
Mva1269I GAATGC 3 cut(s) 10, 367, 441
MvnI CGCG 3 cut(s) 140, 320, 327
MwoI GCNNNNNNNGC 7 cut(s) 202, 295, 304, 324, 418, 647, 716
NciI CCSGG 1 cut(s) 275
NdeII GATC 4 cut(s) 100, 167, 241, 486
NheI GCTAGC 1 cut(s) 439
NlaIII CATG 4 cut(s) 561, 596, 647, 760
NlaIV GGNNCC 1 cut(s) 603
NmeAIII GCCGAG 1 cut(s) 139
NspI RCATGY 2 cut(s) 561, 760
NspV TTCGAA 1 cut(s) 368
PaeI GCATGC 1 cut(s) 760
PciSI GCTCTTC 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PctI GAATGC 3 cut(s) 10, 367, 441
PfeI GAWTC 1 cut(s) 569
PflFI GACNNNGTC 1 cut(s) 175
PkrI GCNGC 5 cut(s) 139, 252, 255, 379, 712
Ple19I CGATCG 1 cut(s) 103
PleI GAGTC 2 cut(s) 122, 400
PpsI GAGTC 2 cut(s) 122, 400
Psp124BI GAGCTC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 1 cut(s) 271
PstI CTGCAG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 175
PvuI CGATCG 1 cut(s) 103
SacI GAGCTC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 689
SatI GCNGC 5 cut(s) 138, 251, 254, 378, 711
Sau3AI GATC 4 cut(s) 100, 167, 241, 486
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 2 cut(s) 122, 400
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 2 cut(s) 158, 515
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 251
SfuI TTCGAA 1 cut(s) 368
SinI GGWCC 1 cut(s) 271
SmiI ATTTAAAT 1 cut(s) 690
SphI GCATGC 1 cut(s) 760
Sse9I AATT 2 cut(s) 119, 520
SsiI CCGC 3 cut(s) 80, 138, 378
SspI AATATT 1 cut(s) 694
SspMI CTAG 1 cut(s) 440
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 273
SwaI ATTTAAAT 1 cut(s) 690
TaaI ACNGT 1 cut(s) 633
TaiI ACGT 1 cut(s) 176
TaqI TCGA 5 cut(s) 20, 54, 123, 170, 368
TaqII GACCGA 1 cut(s) 93
TasI AATT 2 cut(s) 119, 520
TauI GCSGC 2 cut(s) 140, 380
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 1 cut(s) 689
Tru9I TTAA 1 cut(s) 689
TscAI CASTG 1 cut(s) 290
TseI GCWGC 3 cut(s) 250, 253, 710
TspDTI ATGAA 3 cut(s) 17, 374, 593
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 1 cut(s) 290
Tth111I GACNNNGTC 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 1 cut(s) 119
XceI RCATGY 2 cut(s) 561, 760
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 1 cut(s) 440
ZraI GACGTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.