RchiOBHm_Chr1g0313541

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000840
Physical Location & Seq
Reverse (-)
633927 .. 634808
882 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54435

Sequence Viewer

Length: 294 bp
ATGAATGCTTCGAACGATGCCGCAGAAGGTCGGTTGCTGGCTCAGTTGACTCAGATCTTTGATAAACAGCATTTTGAGCCAGCGGAAGTTGGAATGCTAGCGAGGTGCTTCTGCATACCACTTGTTTCTGTTCTTGTTGGAAAGATCAACAAGCAAGGGATTTTGTTGTGCCCTACCAATTCAAAATATATATTGAAGTGTGTTAGCATCATTGACATTCACTTTAGTGAGTGTGCTTCTTCCCCCCTTCCCCCGGCTTGGCCACCTTCCTTTGTAATGGAAACTATAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.62

Weight (kDa)

6.03

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 21, 83
AcoI YGGCCR 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 253, 258
AgsI TTSAA 2 cut(s) 183, 196
AleI CACNNNNGTG 1 cut(s) 225
AoxI GGCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 254
AsuII TTCGAA 1 cut(s) 11
AsuNHI GCTAGC 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 254
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 285
BglII AGATCT 1 cut(s) 54
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 2 cut(s) 7, 216
BmtI GCTAGC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 258
BseDI CCNNGG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 253, 258
BseMII CTCAG 2 cut(s) 56, 65
BseSI GKGCMC 1 cut(s) 173
BshFI GGCC 1 cut(s) 262
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 253, 258
BsmI GAATGC 2 cut(s) 10, 99
BsnI GGCC 1 cut(s) 262
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 2 cut(s) 54, 144
BspACI CCGC 2 cut(s) 21, 83
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 2 cut(s) 55, 64
BspOI GCTAGC 1 cut(s) 101
BspT104I TTCGAA 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 2 cut(s) 54, 144
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 39, 81, 99
BstDEI CTNAG 2 cut(s) 42, 51
BstKTI GATC 2 cut(s) 57, 147
BstMBI GATC 2 cut(s) 54, 144
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
BsuRI GGCC 1 cut(s) 262
Cac8I GCNNGC 3 cut(s) 39, 81, 99
CviJI RGCY 4 cut(s) 41, 79, 257, 262
CviKI_1 RGCY 4 cut(s) 41, 79, 257, 262
DdeI CTNAG 2 cut(s) 42, 51
DpnI GATC 2 cut(s) 56, 146
DpnII GATC 2 cut(s) 54, 144
EaeI YGGCCR 1 cut(s) 260
FaiI YATR 4 cut(s) 116, 189, 191, 287
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 98
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 262
HapII CCGG 1 cut(s) 254
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 3 cut(s) 20, 257, 276
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 42, 51
Kzo9I GATC 2 cut(s) 54, 144
LpnPI CCDG 3 cut(s) 23, 93, 267
LweI GCATC 2 cut(s) 7, 216
MaeI CTAG 1 cut(s) 98
MalI GATC 2 cut(s) 56, 146
MboI GATC 2 cut(s) 54, 144
MboII GAAGA 1 cut(s) 231
MflI RGATCY 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 173
MlsI TGGCCA 1 cut(s) 262
MluCI AATT 1 cut(s) 178
MluNI TGGCCA 1 cut(s) 262
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 2 cut(s) 70, 118
MnlI CCTC 1 cut(s) 96
Mox20I TGGCCA 1 cut(s) 262
MscI TGGCCA 1 cut(s) 262
MslI CAYNNNNRTG 1 cut(s) 225
Msp20I TGGCCA 1 cut(s) 262
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 254
Mva1269I GAATGC 2 cut(s) 10, 99
MwoI GCNNNNNNNGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 254
NdeII GATC 2 cut(s) 54, 144
NheI GCTAGC 1 cut(s) 97
NspV TTCGAA 1 cut(s) 11
OliI CACNNNNGTG 1 cut(s) 225
PctI GAATGC 2 cut(s) 10, 99
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PsuI RGATCY 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 225
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 54, 144
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 173
SetI ASST 3 cut(s) 31, 107, 268
SfaNI GCATC 2 cut(s) 7, 216
SfcI CTRYAG 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 1 cut(s) 178
SsiI CCGC 2 cut(s) 21, 83
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 252
TaqI TCGA 1 cut(s) 11
TasI AATT 1 cut(s) 178
TauI GCSGC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.