Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

4415243 .. 4416885

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1055300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGACTACGGAACTGGAAGTTGGAAAGCTGGGTTGGGTCGGAGCTCAGGAGAACCATGTAGAGGCACCTGAAGAGTTCCCAAAGAAGGCTAAACTGTTCTTCGCCCATGCTGCTGAAAATTGGAATGCTGAGTTTTACTCCAAATTCAATGACGATGTTTATGCAACTGTTGATTCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

61

Amino Acids

6.84

Weight (kDa)

4.6

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	61, 85
AgsI	TTSAA	2 cut(s)	148, 177
AjuI	GAANNNNNNNTTGG	3 cut(s)	16, 35, 48
AluBI	AGCT	2 cut(s)	28, 44
AluI	AGCT	2 cut(s)	28, 44
Alw21I	GWGCWC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
Bpu10I	CCTNAGC	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 85
Bse1I	ACTGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	61, 85
BseMII	CTCAG	2 cut(s)	59, 120
BseNI	ACTGG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	28
BshNI	GGYRCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	61, 85
BsmI	GAATGC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	46
BspCNI	CTCAG	2 cut(s)	58, 121
BspLI	GGNNCC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	96, 169
Bst6I	CTCTTC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	45, 129
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	97
CviAII	CATG	2 cut(s)	56, 107
CviJI	RGCY	3 cut(s)	28, 44, 89
CviKI_1	RGCY	3 cut(s)	28, 44, 89
DdeI	CTNAG	2 cut(s)	45, 129
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	2 cut(s)	59, 110
FaiI	YATR	3 cut(s)	57, 108, 162
FatI	CATG	2 cut(s)	55, 106
Fnu4HI	GCNGC	1 cut(s)	111
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
GsaI	CCCAGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	59, 110
HinfI	GANTC	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	2 cut(s)	96, 169
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	45, 129
Hsp92II	CATG	2 cut(s)	59, 110
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	3 cut(s)	14, 32, 81
Lsp1109I	GCAGC	1 cut(s)	97
MboII	GAAGA	2 cut(s)	83, 91
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	2 cut(s)	118, 143
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	110
NlaIII	CATG	2 cut(s)	59, 110
NlaIV	GGNNCC	1 cut(s)	66
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	46
SatI	GCNGC	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	3 cut(s)	30, 46, 70
SgeI	CNNG	6 cut(s)	26, 41, 59, 68, 80, 119
Sse9I	AATT	2 cut(s)	118, 143
SstI	GAGCTC	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	96, 169
TasI	AATT	2 cut(s)	118, 143
TfiI	GAWTC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	110
TspGWI	ACGGA	1 cut(s)	23
XapI	RAATTY	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.