Rroxscaffold_6G00388200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000840
Physical Location & Seq
Reverse (-)
1002736 .. 1007809
5074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388200.1

Sequence Viewer

Length: 414 bp
ATGCAGGTTATGGGCGCGTGTCGCGCAGACGAGAGGTTGAAGCCTTTGCTGATGATGAATGCTTCGAACGATGCTGCAGAAGGTCGGTTGCTGGCTCAGTTGACTCAGGATAAAGCCGTCAAGATATTGATCAATCCAATGGCTCTCATCATCTCATGCATGTTATTGGAACTTCCTCTCAGATTCATCTCAGGACATTTGCCAGGAGCAAAGAGGGGTCAAAACATGGAACTGATGCATGATTGCGCTTTAAAATATCCAGATCGTGTTCAGAATTTGTACTTCACATTCCTCTTTGTTCTCCGGGCAGTGACAAAAGGTATGTGTTTTGAATTGGGGTTTGAGGAGGTTGGAATGAAAAAGGTGTATGTCCAGAACTACAAGGAAAAGGAGAAGTTGGAGCATAGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.69

Weight (kDa)

8.93

Isoelectric Point (pI)

24.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERO1 PF04137 72 - 107 5.9e-06 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 17, 24
AcsI RAATTY 1 cut(s) 274
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 2 cut(s) 40, 332
AjnI CCWGG 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 274
AspLEI GCGC 3 cut(s) 17, 26, 248
AsuC2I CCSGG 1 cut(s) 305
AsuII TTCGAA 1 cut(s) 65
BbvI GCAGC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 1 cut(s) 129
BcnI CCSGG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 204, 305
BmrFI CCNGG 2 cut(s) 204, 305
BmsI GCATC 2 cut(s) 61, 225
Bpu14I TTCGAA 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 128
BseMII CTCAG 4 cut(s) 110, 119, 193, 204
BseRI GAGGAG 1 cut(s) 359
BseXI GCAGC 1 cut(s) 61
Bsh1236I CGCG 2 cut(s) 17, 24
BsiSI CCGG 1 cut(s) 304
BsmI GAATGC 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 65
Bsp143I GATC 2 cut(s) 129, 262
BspCNI CTCAG 4 cut(s) 109, 118, 192, 203
BspFNI CGCG 2 cut(s) 17, 24
BspMAI CTGCAG 1 cut(s) 79
BspT104I TTCGAA 1 cut(s) 65
BssMI GATC 2 cut(s) 129, 262
Bst2UI CCWGG 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 4 cut(s) 96, 105, 179, 190
BstFNI CGCG 2 cut(s) 17, 24
BstHHI GCGC 3 cut(s) 17, 26, 248
BstKTI GATC 2 cut(s) 132, 265
BstMBI GATC 2 cut(s) 129, 262
BstMWI GCNNNNNNNGC 2 cut(s) 21, 23
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 202, 303
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 2 cut(s) 17, 24
BstV1I GCAGC 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 3 cut(s) 17, 26, 248
Csp6I GTAC 1 cut(s) 280
CviAII CATG 4 cut(s) 156, 160, 226, 239
CviJI RGCY 5 cut(s) 43, 95, 116, 143, 409
CviKI_1 RGCY 5 cut(s) 43, 95, 116, 143, 409
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 4 cut(s) 96, 105, 179, 190
DpnI GATC 2 cut(s) 131, 264
DpnII GATC 2 cut(s) 129, 262
DraI TTTAAA 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 202
EcoT22I ATGCAT 2 cut(s) 161, 240
FaeI CATG 4 cut(s) 159, 163, 229, 242
FaiI YATR 8 cut(s) 11, 157, 161, 227, 240, 323, 369, 405
FatI CATG 4 cut(s) 155, 159, 225, 238
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GlaI GCGC 3 cut(s) 16, 25, 247
GluI GCNGC 1 cut(s) 75
HapII CCGG 1 cut(s) 304
HhaI GCGC 3 cut(s) 17, 26, 248
Hin1II CATG 4 cut(s) 159, 163, 229, 242
Hin6I GCGC 3 cut(s) 15, 24, 246
HinP1I GCGC 3 cut(s) 15, 24, 246
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 2 cut(s) 103, 183
HpaII CCGG 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 3 cut(s) 182, 273, 413
Hpy188III TCNNGA 5 cut(s) 107, 121, 192, 260, 373
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 74
HpyCH4V TGCA 4 cut(s) 4, 77, 159, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 23
HpyF3I CTNAG 4 cut(s) 96, 105, 179, 190
Hsp92II CATG 4 cut(s) 159, 163, 229, 242
HspAI GCGC 3 cut(s) 15, 24, 246
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 2 cut(s) 129, 262
LmnI GCTCC 2 cut(s) 206, 400
LpnPI CCDG 8 cut(s) 77, 92, 177, 189, 216, 273, 317, 386
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 2 cut(s) 61, 225
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 131, 264
MboI GATC 2 cut(s) 129, 262
MluCI AATT 2 cut(s) 274, 332
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 2 cut(s) 331, 378
MnlI CCTC 6 cut(s) 27, 186, 207, 302, 337, 340
Mph1103I ATGCAT 2 cut(s) 161, 240
MseI TTAA 1 cut(s) 251
MspI CCGG 1 cut(s) 304
MspR9I CCNGG 2 cut(s) 204, 305
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 2 cut(s) 17, 24
MwoI GCNNNNNNNGC 2 cut(s) 21, 23
NciI CCSGG 1 cut(s) 305
NdeII GATC 2 cut(s) 129, 262
NlaIII CATG 4 cut(s) 159, 163, 229, 242
NmuCI GTSAC 1 cut(s) 310
NsiI ATGCAT 2 cut(s) 161, 240
NspI RCATGY 1 cut(s) 163
NspV TTCGAA 1 cut(s) 65
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 183
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PstI CTGCAG 1 cut(s) 79
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 129, 262
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 2 cut(s) 204, 305
SetI ASST 6 cut(s) 9, 38, 85, 322, 351, 366
SfaNI GCATC 2 cut(s) 61, 225
SfcI CTRYAG 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 65
Sse9I AATT 2 cut(s) 274, 332
StyD4I CCNGG 2 cut(s) 202, 303
TaqI TCGA 1 cut(s) 65
TasI AATT 2 cut(s) 274, 332
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 71, 175, 371
TspRI CASTG 1 cut(s) 315
XapI RAATTY 1 cut(s) 274
XceI RCATGY 1 cut(s) 163
Zsp2I ATGCAT 2 cut(s) 161, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.