Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Reverse (-)

31465387 .. 31470433

Gene Structure 5047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCAGGTTATGGGCGCGTGTCGCGCAGACGAGAGGTTGAAGCCTTTGCTGATGATGAATGCTTCGAACGATGCTGCAGAAGGTCGGTTGCTGGCTCAGTTGACTCAGGATAAAGCCGTCAAGATATTGATCAATCCAATGGCTCTCATCATCTCATGCATGTTATTGGAACTTCCTCTCAGGTTCTTCATCAGCCTATCAACTGAGGACTATGACTTTGAATGCTTTTGGGGTTTTCTGCAGTATATGCAGGTTTTAAATTCATCTCAGGACATTTGCCAGGAGCAAAGAGTATTGTACAAATTAATATCAGGGGGTCAAAACATGGAACTGATGCATGATTGCGCTTTAAAATATCCAGATCGTGTTCAGAATTTGTACTTCACATTCCTCTTTGTTCTCCGGGCAGTGACAAAAGGTATGTGTTTTGAATTGGGGTTTGAGGAGGTTGGAATGAAAAAGGTGTATGTCCAGAACTACAAGGAAAAGGAGAAGTTGGAGCATAGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

170

Amino Acids

19.8

Weight (kDa)

5.74

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccII	CGCG	2 cut(s)	17, 24
AcsI	RAATTY	2 cut(s)	259, 373
AfaI	GTAC	2 cut(s)	299, 380
AgsI	TTSAA	3 cut(s)	40, 221, 431
AjnI	CCWGG	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	2 cut(s)	259, 373
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AseI	ATTAAT	1 cut(s)	305
AspLEI	GCGC	3 cut(s)	17, 26, 347
AsuC2I	CCSGG	1 cut(s)	404
AsuII	TTCGAA	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	281
BclI	TGATCA	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	404
BfmI	CTRYAG	2 cut(s)	75, 239
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	281, 404
BmrFI	CCNGG	2 cut(s)	281, 404
BmsI	GCATC	2 cut(s)	61, 324
Bpu14I	TTCGAA	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	128
Bse8I	GATNNNNATC	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	281
BseJI	GATNNNNATC	1 cut(s)	128
BseMII	CTCAG	5 cut(s)	110, 119, 193, 195, 281
BseRI	GAGGAG	1 cut(s)	458
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	2 cut(s)	17, 24
BsiSI	CCGG	1 cut(s)	403
BsmI	GAATGC	2 cut(s)	64, 227
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	129, 361
BspCNI	CTCAG	5 cut(s)	109, 118, 192, 196, 280
BspFNI	CGCG	2 cut(s)	17, 24
BspMAI	CTGCAG	2 cut(s)	79, 243
BspMI	ACCTGC	1 cut(s)	241
BspT104I	TTCGAA	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	297
BssMI	GATC	2 cut(s)	129, 361
Bst2UI	CCWGG	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstAUI	TGTACA	1 cut(s)	297
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	5 cut(s)	96, 105, 179, 204, 267
BstFNI	CGCG	2 cut(s)	17, 24
BstHHI	GCGC	3 cut(s)	17, 26, 347
BstKTI	GATC	2 cut(s)	132, 364
BstMBI	GATC	2 cut(s)	129, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 23, 247
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	2 cut(s)	279, 402
BstSFI	CTRYAG	2 cut(s)	75, 239
BstUI	CGCG	2 cut(s)	17, 24
BstV1I	GCAGC	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	3 cut(s)	17, 26, 347
Csp6I	GTAC	2 cut(s)	298, 379
CviAII	CATG	4 cut(s)	156, 160, 325, 338
CviJI	RGCY	6 cut(s)	43, 95, 116, 143, 195, 508
CviKI_1	RGCY	6 cut(s)	43, 95, 116, 143, 195, 508
CviQI	GTAC	2 cut(s)	298, 379
DdeI	CTNAG	5 cut(s)	96, 105, 179, 204, 267
DpnI	GATC	2 cut(s)	131, 363
DpnII	GATC	2 cut(s)	129, 361
DraI	TTTAAA	2 cut(s)	258, 351
EcoRII	CCWGG	1 cut(s)	279
EcoT22I	ATGCAT	2 cut(s)	161, 339
FaeI	CATG	4 cut(s)	159, 163, 328, 341
FatI	CATG	4 cut(s)	155, 159, 324, 337
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	75
GlaI	GCGC	3 cut(s)	16, 25, 346
GluI	GCNGC	1 cut(s)	75
HapII	CCGG	1 cut(s)	403
HhaI	GCGC	3 cut(s)	17, 26, 347
Hin1II	CATG	4 cut(s)	159, 163, 328, 341
Hin6I	GCGC	3 cut(s)	15, 24, 345
HinP1I	GCGC	3 cut(s)	15, 24, 345
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	403
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	2 cut(s)	372, 512
Hpy188III	TCNNGA	5 cut(s)	107, 121, 269, 359, 472
Hpy8I	GTNNAC	1 cut(s)	102
HpyAV	CCTTC	1 cut(s)	74
HpyCH4V	TGCA	6 cut(s)	4, 77, 159, 241, 250, 337
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 23, 247
HpyF3I	CTNAG	5 cut(s)	96, 105, 179, 204, 267
Hsp92II	CATG	4 cut(s)	159, 163, 328, 341
HspAI	GCGC	3 cut(s)	15, 24, 345
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	129, 361
LmnI	GCTCC	2 cut(s)	283, 499
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	61, 324
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	131, 363
MboI	GATC	2 cut(s)	129, 361
MboII	GAAGA	1 cut(s)	178
MluCI	AATT	4 cut(s)	259, 302, 373, 431
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	2 cut(s)	430, 477
MnlI	CCTC	6 cut(s)	27, 186, 199, 401, 436, 439
Mph1103I	ATGCAT	2 cut(s)	161, 339
MseI	TTAA	3 cut(s)	257, 305, 350
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	2 cut(s)	281, 404
Mva1269I	GAATGC	2 cut(s)	64, 227
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	2 cut(s)	17, 24
MwoI	GCNNNNNNNGC	3 cut(s)	21, 23, 247
NciI	CCSGG	1 cut(s)	404
NdeII	GATC	2 cut(s)	129, 361
NlaIII	CATG	4 cut(s)	159, 163, 328, 341
NmuCI	GTSAC	1 cut(s)	409
NsiI	ATGCAT	2 cut(s)	161, 339
NspI	RCATGY	1 cut(s)	163
NspV	TTCGAA	1 cut(s)	65
PctI	GAATGC	2 cut(s)	64, 227
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PshBI	ATTAAT	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PstI	CTGCAG	2 cut(s)	79, 243
RsaI	GTAC	2 cut(s)	299, 380
RsaNI	GTAC	2 cut(s)	298, 379
SaqAI	TTAA	3 cut(s)	257, 305, 350
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	129, 361
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	2 cut(s)	281, 404
SetI	ASST	8 cut(s)	9, 38, 85, 185, 255, 421, 450, 465
SfaNI	GCATC	2 cut(s)	61, 324
SfcI	CTRYAG	2 cut(s)	75, 239
SfuI	TTCGAA	1 cut(s)	65
Sse9I	AATT	4 cut(s)	259, 302, 373, 431
StyD4I	CCNGG	2 cut(s)	279, 402
TaqI	TCGA	1 cut(s)	65
TasI	AATT	4 cut(s)	259, 302, 373, 431
TatI	WGTACW	2 cut(s)	297, 378
Tru1I	TTAA	3 cut(s)	257, 305, 350
Tru9I	TTAA	3 cut(s)	257, 305, 350
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	4 cut(s)	71, 178, 252, 470
TspRI	CASTG	1 cut(s)	414
VspI	ATTAAT	1 cut(s)	305
XapI	RAATTY	2 cut(s)	259, 373
XceI	RCATGY	1 cut(s)	163
Zsp2I	ATGCAT	2 cut(s)	161, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.