Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Reverse (-)

15342261 .. 15369530

Gene Structure 27270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG178900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTTGTTGGCAATAGTGAAGGATACCCATGTGGAGGCACCTGAAGAGTTCTCAAAGAAGGCTACACCGTTCTTTGCTCATGTTGCTGATAAGTTTTATGCCAAAGTCAATGATGATGTTTATTTAAATATTGATGTTCTGGGAGCTGCACTTGCAACTCATTTAGACAAGCCTTGCATTTATATTGGGTGCATGCAGTCGGGCGAAGTTTTCTCTGAGCTGGATTGCTTGGGTGGCATGTCACCCGGGCCACGGCCCCGATACCCGAAAGGCACGTCTCCAGAAGCAACGAGGAAGGCCAAGGGTTCTGAGGTGAAGGCCTTGTTCTCTGTGGTTGGAATGACATGTGCTGCCCGTGCCGGGTCTGTGGAGAAGGAGGTGAAGCGGCTCCCGGGGATTCAGGAGGCCGCCGTGGACGTGTTGAACAACACAGCCCTTGTTCTCTACTCTACTATCCCAGCTTCGTCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

157

Amino Acids

16.79

Weight (kDa)

6.29

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	109 - 151	2.5e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	2 cut(s)	385, 408
AcuI	CTGAAG	1 cut(s)	63
AfiI	CCNNNNNNNGG	3 cut(s)	34, 252, 360
AflIII	ACRYGT	2 cut(s)	344, 417
AgsI	TTSAA	1 cut(s)	424
AjiI	CACGTC	2 cut(s)	276, 418
AluBI	AGCT	3 cut(s)	146, 220, 461
AluI	AGCT	3 cut(s)	146, 220, 461
Alw26I	GTCTC	1 cut(s)	282
Ama87I	CYCGRG	2 cut(s)	245, 391
AoxI	GGCC	5 cut(s)	248, 254, 297, 318, 405
ApeKI	GCWGC	2 cut(s)	146, 350
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspS9I	GGNCC	2 cut(s)	248, 255
AsuC2I	CCSGG	5 cut(s)	246, 247, 361, 392, 393
AsuHPI	GGTGA	3 cut(s)	234, 325, 391
AvaI	CYCGRG	2 cut(s)	245, 391
BaeI	ACNNNNGTAYC	2 cut(s)	15, 48
BanI	GGYRCC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	133, 337
BceAI	ACGGC	2 cut(s)	269, 395
BciVI	GTATCC	1 cut(s)	16
BcnI	CCSGG	5 cut(s)	246, 247, 361, 392, 393
BcoDI	GTCTC	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	4 cut(s)	147, 351, 386, 408
BlsI	GCNGC	4 cut(s)	148, 352, 387, 409
Bme1390I	CCNGG	5 cut(s)	246, 247, 361, 392, 393
BmeT110I	CYCGRG	2 cut(s)	245, 391
BmgBI	CACGTC	2 cut(s)	276, 418
BmgT120I	GGNCC	2 cut(s)	248, 255
BmiI	GGNNCC	3 cut(s)	39, 257, 389
BmrFI	CCNGG	5 cut(s)	246, 247, 361, 392, 393
BpmI	CTGGAG	1 cut(s)	264
BpuMI	CCSGG	5 cut(s)	246, 247, 361, 392, 393
BsaJI	CCNNGG	6 cut(s)	245, 251, 300, 391, 392, 411
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 252, 360
BseDI	CCNNGG	6 cut(s)	245, 251, 300, 391, 392, 411
BseLI	CCNNNNNNNGG	3 cut(s)	34, 252, 360
BseMII	CTCAG	2 cut(s)	207, 300
BseXI	GCAGC	2 cut(s)	133, 337
BseYI	CCCAGC	1 cut(s)	457
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	5 cut(s)	250, 256, 299, 320, 407
BshNI	GGYRCC	1 cut(s)	37
BsiHKCI	CYCGRG	2 cut(s)	245, 391
BsiSI	CCGG	3 cut(s)	246, 360, 392
BslI	CCNNNNNNNGG	3 cut(s)	34, 252, 360
BsmAI	GTCTC	1 cut(s)	282
BsmBI	CGTCTC	1 cut(s)	282
BsnI	GGCC	5 cut(s)	250, 256, 299, 320, 407
BsoBI	CYCGRG	2 cut(s)	245, 391
BspACI	CCGC	2 cut(s)	385, 408
BspANI	GGCC	5 cut(s)	250, 256, 299, 320, 407
BspCNI	CTCAG	2 cut(s)	208, 301
BspLI	GGNNCC	3 cut(s)	39, 257, 389
BspT107I	GGYRCC	1 cut(s)	37
BssECI	CCNNGG	6 cut(s)	245, 251, 300, 391, 392, 411
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	216, 309
BstDSI	CCRYGG	2 cut(s)	251, 411
BstMAI	GTCTC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 152, 234, 356
BstNSI	RCATGY	3 cut(s)	196, 241, 348
BstSCI	CCNGG	5 cut(s)	244, 245, 359, 390, 391
BstV1I	GCAGC	2 cut(s)	133, 337
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	5 cut(s)	250, 256, 299, 320, 407
BtgI	CCRYGG	2 cut(s)	251, 411
BtrI	CACGTC	2 cut(s)	276, 418
Cac8I	GCNNGC	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	248, 255
Cfr9I	CCCGGG	2 cut(s)	245, 391
CviAII	CATG	5 cut(s)	29, 80, 193, 238, 345
DdeI	CTNAG	2 cut(s)	216, 309
DraI	TTTAAA	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	63
Eco88I	CYCGRG	2 cut(s)	245, 391
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	5 cut(s)	32, 83, 196, 241, 348
FaiI	YATR	7 cut(s)	30, 81, 99, 183, 194, 239, 346
FatI	CATG	5 cut(s)	28, 79, 192, 237, 344
Fnu4HI	GCNGC	4 cut(s)	147, 351, 386, 408
Fsp4HI	GCNGC	4 cut(s)	147, 351, 386, 408
GluI	GCNGC	4 cut(s)	147, 351, 386, 408
GsaI	CCCAGC	1 cut(s)	461
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	5 cut(s)	250, 256, 299, 320, 407
HapII	CCGG	3 cut(s)	246, 360, 392
Hin1II	CATG	5 cut(s)	32, 83, 196, 241, 348
HinfI	GANTC	1 cut(s)	397
HpaII	CCGG	3 cut(s)	246, 360, 392
HphI	GGTGA	3 cut(s)	234, 325, 391
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	2 cut(s)	217, 310
Hpy188III	TCNNGA	2 cut(s)	281, 401
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	5 cut(s)	13, 52, 289, 310, 367
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4IV	ACGT	2 cut(s)	275, 417
HpyCH4V	TGCA	5 cut(s)	149, 155, 177, 192, 196
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 152, 234, 356
HpyF3I	CTNAG	2 cut(s)	216, 309
HpySE526I	ACGT	2 cut(s)	275, 417
Hsp92II	CATG	5 cut(s)	32, 83, 196, 241, 348
LmnI	GCTCC	2 cut(s)	143, 393
LpnPI	CCDG	8 cut(s)	54, 125, 206, 259, 294, 373, 386, 405
Lsp1109I	GCAGC	2 cut(s)	133, 337
MaeII	ACGT	2 cut(s)	275, 417
MaeIII	GTNAC	1 cut(s)	240
MboII	GAAGA	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	5 cut(s)	28, 285, 304, 370, 397
MseI	TTAA	1 cut(s)	125
MspI	CCGG	3 cut(s)	246, 360, 392
MspR9I	CCNGG	5 cut(s)	246, 247, 361, 392, 393
MwoI	GCNNNNNNNGC	4 cut(s)	83, 152, 234, 356
NciI	CCSGG	5 cut(s)	246, 247, 361, 392, 393
NlaIII	CATG	5 cut(s)	32, 83, 196, 241, 348
NlaIV	GGNNCC	3 cut(s)	39, 257, 389
NmuCI	GTSAC	1 cut(s)	240
NspI	RCATGY	3 cut(s)	196, 241, 348
PaeI	GCATGC	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	320
PciI	ACATGT	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	4 cut(s)	148, 352, 387, 409
PscI	ACATGT	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	457
PspN4I	GGNNCC	3 cut(s)	39, 257, 389
PspPI	GGNCC	2 cut(s)	248, 255
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	4 cut(s)	147, 351, 386, 408
Sau96I	GGNCC	2 cut(s)	248, 255
ScrFI	CCNGG	5 cut(s)	246, 247, 361, 392, 393
SetI	ASST	8 cut(s)	43, 148, 222, 278, 315, 381, 420, 463
SmaI	CCCGGG	2 cut(s)	247, 393
SmiI	ATTTAAAT	1 cut(s)	126
SphI	GCATGC	1 cut(s)	196
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	2 cut(s)	385, 408
SspI	AATATT	1 cut(s)	130
StuI	AGGCCT	1 cut(s)	320
StyD4I	CCNGG	5 cut(s)	244, 245, 359, 390, 391
StyI	CCWWGG	1 cut(s)	300
SwaI	ATTTAAAT	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	69
TaiI	ACGT	2 cut(s)	278, 420
TauI	GCSGC	2 cut(s)	388, 410
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	240
TseI	GCWGC	2 cut(s)	146, 350
Tsp45I	GTSAC	1 cut(s)	240
TspMI	CCCGGG	2 cut(s)	245, 391
XceI	RCATGY	3 cut(s)	196, 241, 348
XmaI	CCCGGG	2 cut(s)	245, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.