Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Forward (+)

21148222 .. 21148461

Gene Structure 240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG220300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCGAACCGAGCAGATGAAGAAGATGGTGGGGTGTTGACGGTGGTGAAGAAGGCGGTGGAGGACAAGCTCGACGAGGAAATCGCAGCCCTAGATTGGGTGGACGACTACGATCTGGAGACGCTCAGAGATCGAAGGCTCCAACAGATGAAGAAGATGGCAGAGAAGCGCAGCCGTTGGATCTCCCTTGGCCAAGGCGAGTACACGGATTTGGACCTGACAGTGGAGGAGCAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

79

Amino Acids

9.2

Weight (kDa)

4.39

Isoelectric Point (pI)

72.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	190
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	3 cut(s)	96, 97, 223
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	86, 171
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	98, 183
BccI	CCATC	2 cut(s)	20, 151
BceAI	ACGGC	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	2 cut(s)	87, 172
BlsI	GCNGC	2 cut(s)	88, 173
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	187, 193
BsaXI	ACNNNNNCTCC	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 97, 223
BseDI	CCNNGG	2 cut(s)	187, 193
BseLI	CCNNNNNNNGG	3 cut(s)	96, 97, 223
BseMII	CTCAG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	98, 183
BshFI	GGCC	1 cut(s)	192
BslI	CCNNNNNNNGG	3 cut(s)	96, 97, 223
BsmAI	GTCTC	1 cut(s)	113
BsmBI	CGTCTC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	112, 130, 180
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	187, 193
BssMI	GATC	3 cut(s)	112, 130, 180
BssT1I	CCWWGG	2 cut(s)	187, 193
Bst4CI	ACNGT	2 cut(s)	43, 223
BstDEI	CTNAG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	3 cut(s)	115, 133, 183
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	3 cut(s)	112, 130, 180
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	98, 183
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	228
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	214
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	202
CviJI	RGCY	5 cut(s)	70, 89, 139, 174, 192
CviKI_1	RGCY	5 cut(s)	70, 89, 139, 174, 192
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	3 cut(s)	114, 132, 182
DpnII	GATC	3 cut(s)	112, 130, 180
EaeI	YGGCCR	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	187, 193
Eco47I	GGWCC	1 cut(s)	214
EcoT14I	CCWWGG	2 cut(s)	187, 193
ErhI	CCWWGG	2 cut(s)	187, 193
Esp3I	CGTCTC	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	87, 172
Fsp4HI	GCNGC	2 cut(s)	87, 172
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	2 cut(s)	87, 172
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	192
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	39, 103, 204
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	3 cut(s)	39, 103, 204
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	46, 129
HpyCH4III	ACNGT	2 cut(s)	43, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	125
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	112, 130, 180
LmnI	GCTCC	2 cut(s)	144, 229
LpnPI	CCDG	3 cut(s)	101, 218, 230
Lsp1109I	GCAGC	2 cut(s)	98, 183
MaeI	CTAG	1 cut(s)	92
MalI	GATC	3 cut(s)	114, 132, 182
MboI	GATC	3 cut(s)	112, 130, 180
MboII	GAAGA	5 cut(s)	32, 35, 61, 163, 166
MflI	RGATCY	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	192
MluNI	TGGCCA	1 cut(s)	192
MmeI	TCCRAC	2 cut(s)	158, 166
MnlI	CCTC	3 cut(s)	55, 70, 220
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	3 cut(s)	112, 130, 180
NlaIV	GGNNCC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	88, 173
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SatI	GCNGC	2 cut(s)	87, 172
Sau3AI	GATC	3 cut(s)	112, 130, 180
Sau96I	GGNCC	1 cut(s)	214
SetI	ASST	2 cut(s)	72, 219
SinI	GGWCC	1 cut(s)	214
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	92
StyI	CCWWGG	2 cut(s)	187, 193
TaaI	ACNGT	2 cut(s)	43, 223
TaqI	TCGA	2 cut(s)	72, 133
TatI	WGTACW	1 cut(s)	201
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	2 cut(s)	86, 171
TspDTI	ATGAA	2 cut(s)	33, 164
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	214
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.