Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000840

Physical Location & Seq

Genomic Coordinates Reverse (-)

15392698 .. 15393344

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG171700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGTTGCATTTGCAAGGATTGCTTGGGTGGCATGTCACCCGGGTCACGGCCACACTACCCCTCGCTGCCCCGATACACGAAAGGCACGTCTCCAGAAGCAACGAGGAAGGCCAGGGGTTCTGAGGTGAAGGCCTTGTTCTCTGTTGTTGGAATGACATGTGCTGCCTGTGCCGGATCTGTGGAGAAGGCGGTGAAGCGGCTCCCGGGGATACAGGAGGCCGTCGTGGACGTGTTGAATAACACAGCCCTTGTTCTCTACTATCCCAGCTTGGTCAATCATGTTGTAATTGGGAAAGGATCCTGCTCCGCTCCTTCAAAAGGAGCAATAAACCATCTAAGAGTTAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

117

Amino Acids

12.29

Weight (kDa)

9.62

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	47 - 92	1.3e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000840)

Species	Orthologous Gene IDs
malus_domestica	MD03G1055300.v1.1 MD07G1214200.v1.1 MD12G1168400.v1.1
pyrus_communis	pycom04g07310 pycom12g15990
rosa_chinensis	RchiOBHm_Chr1g0313541 RchiOBHm_Chr1g0317181 RchiOBHm_Chr2g0134361 RchiOBHm_Chr6g0250031
rosa_laevigata	RLG00000003886 RLG00000007406 RLG00000011469 RLG00000011470 RLG00000030498 RLG00000033863
rosa_multiflora	Rmu_sc0002892.1_g000017 Rmu_sc0003338.1_g000013 Rmu_sc0004498.1_g000009 Rmu_sc0006199.1_g000003 Rmu_sc0016218.1_g000011 Rmu_sc0016786.1_g000001 Rmu_sc0036490.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042920 Rroxscaffold_2G00082220 Rroxscaffold_2G00114810 Rroxscaffold_3G00220570 Rroxscaffold_3G00228270 Rroxscaffold_3G00236760 Rroxscaffold_3G00240020 Rroxscaffold_3G00250010 Rroxscaffold_3G00257960 Rroxscaffold_5G00352750 Rroxscaffold_5G00379700 Rroxscaffold_6G00388200
rosa_rugosa	Rorug01G0066800 Rorug05G0244200 Rorug06G0061500 Rorug06G0061600 Rorug06G0061600 Rorug06G0061700 Rorug06G0111400 Rorug06G0489100
rosa_samantha	Rh1AG003800 Rh1AG038900 Rh1AG416400 Rh1BG321500 Rh1CG067300 Rh1DG072100 Rh1DG153100 Rh1DG360700 Rh2AG053000 Rh2BG375000 Rh2CG492900 Rh2DG220300 Rh3BG324200 Rh3CG298300 Rh4AG417900 Rh4CG444400 Rh4DG158900 Rh4DG425600 Rh5DG417100 Rh6AG252400 Rh7AG428200 Rh7BG192200 Rh7CG178900 Rh7DG171700 Rh7DG435000
rosa_wichuraiana	Rw6G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	311
AciI	CCGC	3 cut(s)	191, 199, 309
AclWI	GGATC	3 cut(s)	184, 294, 307
AcoI	YGGCCR	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	48, 320
AflIII	ACRYGT	2 cut(s)	158, 231
AgsI	TTSAA	2 cut(s)	238, 318
AjiI	CACGTC	2 cut(s)	90, 232
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	1 cut(s)	270
AluI	AGCT	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	3 cut(s)	184, 294, 307
Ama87I	CYCGRG	2 cut(s)	41, 205
AoxI	GGCC	4 cut(s)	50, 111, 132, 219
ApeKI	GCWGC	2 cut(s)	67, 164
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AsuC2I	CCSGG	4 cut(s)	42, 43, 206, 207
AsuHPI	GGTGA	3 cut(s)	30, 139, 205
AvaI	CYCGRG	2 cut(s)	41, 205
BamHI	GGATCC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	54, 151
BccI	CCATC	1 cut(s)	342
BceAI	ACGGC	2 cut(s)	65, 206
BciT130I	CCWGG	1 cut(s)	115
BciVI	GTATCC	1 cut(s)	204
BcnI	CCSGG	4 cut(s)	42, 43, 206, 207
BcoDI	GTCTC	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	204
BisI	GCNGC	3 cut(s)	68, 165, 200
BlsI	GCNGC	3 cut(s)	69, 166, 201
Bme1390I	CCNGG	5 cut(s)	42, 43, 115, 206, 207
BmeT110I	CYCGRG	2 cut(s)	41, 205
BmgBI	CACGTC	2 cut(s)	90, 232
BmiI	GGNNCC	2 cut(s)	203, 301
BmrFI	CCNGG	5 cut(s)	42, 43, 115, 206, 207
BpmI	CTGGAG	1 cut(s)	78
BpuMI	CCSGG	4 cut(s)	42, 43, 206, 207
BsaJI	CCNNGG	4 cut(s)	41, 114, 205, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 320
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	4 cut(s)	41, 114, 205, 206
BseLI	CCNNNNNNNGG	2 cut(s)	48, 320
BseMII	CTCAG	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	54, 151
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	4 cut(s)	52, 113, 134, 221
BsiHKCI	CYCGRG	2 cut(s)	41, 205
BsiSI	CCGG	3 cut(s)	42, 174, 206
BslI	CCNNNNNNNGG	2 cut(s)	48, 320
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsnI	GGCC	4 cut(s)	52, 113, 134, 221
BsoBI	CYCGRG	2 cut(s)	41, 205
Bsp143I	GATC	2 cut(s)	176, 299
BspACI	CCGC	3 cut(s)	191, 199, 309
BspANI	GGCC	4 cut(s)	52, 113, 134, 221
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	203, 301
BspPI	GGATC	3 cut(s)	184, 294, 307
BsrBI	CCGCTC	1 cut(s)	311
BssECI	CCNNGG	4 cut(s)	41, 114, 205, 206
BssMI	GATC	2 cut(s)	176, 299
Bst2UI	CCWGG	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	123, 338
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstKTI	GATC	2 cut(s)	179, 302
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	2 cut(s)	176, 299
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 30, 170
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	2 cut(s)	37, 162
BstSCI	CCNGG	5 cut(s)	40, 41, 113, 204, 205
BstV1I	GCAGC	2 cut(s)	54, 151
BstX2I	RGATCY	2 cut(s)	176, 299
BstYI	RGATCY	2 cut(s)	176, 299
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	4 cut(s)	52, 113, 134, 221
BtrI	CACGTC	2 cut(s)	90, 232
Cfr9I	CCCGGG	2 cut(s)	41, 205
CviAII	CATG	3 cut(s)	34, 159, 281
CviJI	RGCY	7 cut(s)	52, 113, 134, 202, 221, 248, 270
CviKI_1	RGCY	7 cut(s)	52, 113, 134, 202, 221, 248, 270
DdeI	CTNAG	2 cut(s)	123, 338
DpnI	GATC	2 cut(s)	178, 301
DpnII	GATC	2 cut(s)	176, 299
EaeI	YGGCCR	1 cut(s)	50
Eco147I	AGGCCT	1 cut(s)	134
Eco88I	CYCGRG	2 cut(s)	41, 205
EcoNI	CCTNNNNNAGG	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	113
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	3 cut(s)	37, 162, 284
FaiI	YATR	3 cut(s)	35, 160, 282
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	3 cut(s)	33, 158, 280
Fnu4HI	GCNGC	3 cut(s)	68, 165, 200
Fsp4HI	GCNGC	3 cut(s)	68, 165, 200
GluI	GCNGC	3 cut(s)	68, 165, 200
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	4 cut(s)	52, 113, 134, 221
HapII	CCGG	3 cut(s)	42, 174, 206
Hin1II	CATG	3 cut(s)	37, 162, 284
HpaII	CCGG	3 cut(s)	42, 174, 206
HphI	GGTGA	3 cut(s)	30, 139, 205
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	4 cut(s)	103, 124, 181, 324
HpyCH4IV	ACGT	2 cut(s)	89, 231
HpyCH4V	TGCA	2 cut(s)	9, 15
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 30, 170
HpyF3I	CTNAG	2 cut(s)	123, 338
HpySE526I	ACGT	2 cut(s)	89, 231
Hsp92II	CATG	3 cut(s)	37, 162, 284
Kzo9I	GATC	2 cut(s)	176, 299
LmnI	GCTCC	4 cut(s)	207, 311, 316, 323
Lsp1109I	GCAGC	2 cut(s)	54, 151
MaeII	ACGT	2 cut(s)	89, 231
MaeIII	GTNAC	2 cut(s)	36, 45
MalI	GATC	2 cut(s)	178, 301
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	2 cut(s)	176, 299
MflI	RGATCY	2 cut(s)	176, 299
MluCI	AATT	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	4 cut(s)	73, 99, 118, 211
MseI	TTAA	1 cut(s)	345
MspI	CCGG	3 cut(s)	42, 174, 206
MspR9I	CCNGG	5 cut(s)	42, 43, 115, 206, 207
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	3 cut(s)	21, 30, 170
NciI	CCSGG	4 cut(s)	42, 43, 206, 207
NdeII	GATC	2 cut(s)	176, 299
NlaIII	CATG	3 cut(s)	37, 162, 284
NlaIV	GGNNCC	2 cut(s)	203, 301
NmuCI	GTSAC	2 cut(s)	36, 45
NspI	RCATGY	2 cut(s)	37, 162
PceI	AGGCCT	1 cut(s)	134
PciI	ACATGT	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	69, 166, 201
PscI	ACATGT	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	203, 301
PsuI	RGATCY	2 cut(s)	176, 299
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	3 cut(s)	68, 165, 200
Sau3AI	GATC	2 cut(s)	176, 299
ScrFI	CCNGG	5 cut(s)	42, 43, 115, 206, 207
SetI	ASST	4 cut(s)	92, 129, 234, 272
SmaI	CCCGGG	2 cut(s)	43, 207
Sse9I	AATT	1 cut(s)	288
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	3 cut(s)	191, 199, 309
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	5 cut(s)	40, 41, 113, 204, 205
TaiI	ACGT	2 cut(s)	92, 234
TasI	AATT	1 cut(s)	288
TauI	GCSGC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseFI	GTSAC	2 cut(s)	36, 45
TseI	GCWGC	2 cut(s)	67, 164
Tsp45I	GTSAC	2 cut(s)	36, 45
TspMI	CCCGGG	2 cut(s)	41, 205
XagI	CCTNNNNNAGG	1 cut(s)	318
XceI	RCATGY	2 cut(s)	37, 162
XmaI	CCCGGG	2 cut(s)	41, 205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.