Rroxscaffold_2G00082220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000840
Physical Location & Seq
Reverse (-)
5109457 .. 5115242
5786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082220.1

Sequence Viewer

Length: 864 bp
ATGGCTAGGTTCAAATTTGGGGTGAAGCTCGATGGGGGATCCAACGGAGGAGACTTCTCGCCGGCCGTGCGAGCTCTCAATGGAGGAGACATTGCAAGGGTGGCACGCGCTCACGGTCTTTGGTGGCCCGAAACTTTTGGAGCATCTCAAACGGAGTTAACCCGGGCAGAAACTCACTGGATAACTCATTCCGAGGTCTGGAGCTCCGGCGAGGGATCGACGTCGTCGGGGAGTGAGATTGGGCTGGAAGAGCGGTTGACAGGGATACTGGTCGAAGGAGGGGACGGAGATCTGTTGCTGCAGCAGAGCAACCGAGAGGACCGGGTTTTGCAGTGGCTTCAAGCGCTTGATATGCAGGTTATGGGCGCGTGTCGCGCAGACGAGAGGTTGAAGCCTTTGCTGATGATGAATGCTTCGAACGATGCTGCAGAAGGTCGGTTGCTGGCTCAGTTGACTCAGGATAAAGCCGTCAAGATATTGATCAATCCAATGGCTCTCATCATCTCATGCATGTTATTGGAACTTCCTCTCAGGTTCTTCATCAGCCTATCAACTGAGGACTATGACTTTGAATGCTTTTGGGGTTTTCTGCAGTATATGCAGGTTTTAAATTCATCTCAGGACATTTGCCAGGAGCAAAGAGTATTGTACAAATTAATATCAGGGGGTCAAAACATGGAACTGATGCATGATTGCGCTTTAAAATATCCAGATCGTGTTCAGAATTTGTACTTCACATTCCTCTTTGTTCTCCGGGCAGTGACAAAAGGTATGTGTTTTGAATTGGGGTTTGAGGAGGTTGGAATGAAAAAGGTGTATGTCCAGAACTACAAGGAAAAGGAGAAGTTGGAGCATAGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

32.44

Weight (kDa)

5.18

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 224
Acc36I ACCTGC 2 cut(s) 346, 592
AccBSI CCGCTC 1 cut(s) 253
AccII CGCG 3 cut(s) 108, 368, 375
AciI CCGC 1 cut(s) 253
AclWI GGATC 3 cut(s) 33, 46, 223
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 3 cut(s) 14, 610, 724
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 2 cut(s) 650, 731
AfeI AGCGCT 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 5 cut(s) 13, 341, 391, 572, 782
AjnI CCWGG 1 cut(s) 630
AluBI AGCT 3 cut(s) 28, 74, 204
AluI AGCT 3 cut(s) 28, 74, 204
Alw21I GWGCWC 2 cut(s) 76, 206
Alw26I GTCTC 2 cut(s) 45, 81
AlwI GGATC 3 cut(s) 33, 46, 223
Ama87I CYCGRG 1 cut(s) 162
Aor51HI AGCGCT 1 cut(s) 345
AoxI GGCC 2 cut(s) 63, 125
ApeKI GCWGC 3 cut(s) 298, 301, 425
ApoI RAATTY 3 cut(s) 14, 610, 724
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
AseI ATTAAT 1 cut(s) 656
AspLEI GCGC 5 cut(s) 110, 346, 368, 377, 698
AspS9I GGNCC 2 cut(s) 126, 319
AsuC2I CCSGG 4 cut(s) 163, 164, 323, 755
AsuHPI GGTGA 1 cut(s) 34
AsuII TTCGAA 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 319
BamHI GGATCC 1 cut(s) 38
BanII GRGCYC 2 cut(s) 76, 206
Bbv12I GWGCWC 2 cut(s) 76, 206
BbvI GCAGC 3 cut(s) 285, 313, 412
BccI CCATC 1 cut(s) 26
BceAI ACGGC 2 cut(s) 50, 452
BciT130I CCWGG 1 cut(s) 632
BciVI GTATCC 1 cut(s) 258
BclI TGATCA 1 cut(s) 480
BcnI CCSGG 4 cut(s) 163, 164, 323, 755
BcoDI GTCTC 2 cut(s) 45, 81
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 3 cut(s) 299, 426, 590
BfoI RGCGCY 1 cut(s) 347
BfuAI ACCTGC 2 cut(s) 346, 592
BfuI GTATCC 1 cut(s) 258
BglII AGATCT 1 cut(s) 289
BisI GCNGC 3 cut(s) 299, 302, 426
BlsI GCNGC 3 cut(s) 300, 303, 427
Bme1390I CCNGG 5 cut(s) 163, 164, 323, 632, 755
Bme18I GGWCC 1 cut(s) 319
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 126, 319
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 5 cut(s) 163, 164, 323, 632, 755
BmsI GCATC 3 cut(s) 152, 412, 675
BpmI CTGGAG 1 cut(s) 220
Bpu14I TTCGAA 1 cut(s) 416
BpuMI CCSGG 4 cut(s) 163, 164, 323, 755
BsaBI GATNNNNATC 1 cut(s) 479
BsaHI GRCGYC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 182, 273
Bse3DI GCAATG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 479
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 2 cut(s) 162, 192
BseJI GATNNNNATC 1 cut(s) 479
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 5 cut(s) 461, 470, 544, 546, 632
BseNI ACTGG 2 cut(s) 182, 273
BseRI GAGGAG 3 cut(s) 63, 99, 809
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 3 cut(s) 285, 313, 412
Bsh1236I CGCG 3 cut(s) 108, 368, 375
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 65, 127
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 2 cut(s) 76, 206
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 5 cut(s) 62, 163, 207, 322, 754
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 198
BsmAI GTCTC 2 cut(s) 45, 81
BsmFI GGGAC 1 cut(s) 296
BsmI GAATGC 2 cut(s) 415, 578
BsnI GGCC 2 cut(s) 65, 127
BsoBI CYCGRG 1 cut(s) 162
Bsp119I TTCGAA 1 cut(s) 416
Bsp1286I GDGCHC 2 cut(s) 76, 206
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 5 cut(s) 38, 215, 289, 480, 712
BspACI CCGC 1 cut(s) 253
BspANI GGCC 2 cut(s) 65, 127
BspCNI CTCAG 5 cut(s) 460, 469, 543, 547, 631
BspFNI CGCG 3 cut(s) 108, 368, 375
BspLI GGNNCC 1 cut(s) 40
BspMAI CTGCAG 3 cut(s) 303, 430, 594
BspMI ACCTGC 2 cut(s) 346, 592
BspPI GGATC 3 cut(s) 33, 46, 223
BspQI GCTCTTC 1 cut(s) 243
BspT104I TTCGAA 1 cut(s) 416
BsrBI CCGCTC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 2 cut(s) 182, 273
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 162, 192
BssMI GATC 5 cut(s) 38, 215, 289, 480, 712
BssNI GRCGYC 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 1 cut(s) 221
BstAPI GCANNNNNTGC 1 cut(s) 598
BstAUI TGTACA 1 cut(s) 648
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 4 cut(s) 63, 72, 106, 444
BstDEI CTNAG 5 cut(s) 447, 456, 530, 555, 618
BstFNI CGCG 3 cut(s) 108, 368, 375
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 5 cut(s) 110, 346, 368, 377, 698
BstKTI GATC 5 cut(s) 41, 218, 292, 483, 715
BstMAI GTCTC 2 cut(s) 45, 81
BstMBI GATC 5 cut(s) 38, 215, 289, 480, 712
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 9 cut(s) 67, 71, 101, 250, 343, 352, 372, 374, 598
BstNI CCWGG 1 cut(s) 632
BstNSI RCATGY 1 cut(s) 514
BstSCI CCNGG 5 cut(s) 161, 162, 321, 630, 753
BstSFI CTRYAG 3 cut(s) 299, 426, 590
BstUI CGCG 3 cut(s) 108, 368, 375
BstV1I GCAGC 3 cut(s) 285, 313, 412
BstX2I RGATCY 2 cut(s) 38, 289
BstYI RGATCY 2 cut(s) 38, 289
BstZI CGGCCG 1 cut(s) 63
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 2 cut(s) 65, 127
BtsI GCAGTG 2 cut(s) 338, 765
BtsIMutI CAGTG 3 cut(s) 175, 338, 765
BveI ACCTGC 2 cut(s) 346, 592
Cac8I GCNNGC 4 cut(s) 63, 72, 106, 444
CfoI GCGC 5 cut(s) 110, 346, 368, 377, 698
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 126, 319
Cfr9I CCCGGG 1 cut(s) 162
Csp6I GTAC 2 cut(s) 649, 730
CviAII CATG 4 cut(s) 507, 511, 676, 689
CviQI GTAC 2 cut(s) 649, 730
DdeI CTNAG 5 cut(s) 447, 456, 530, 555, 618
DpnI GATC 5 cut(s) 40, 217, 291, 482, 714
DpnII GATC 5 cut(s) 38, 215, 289, 480, 712
DraI TTTAAA 2 cut(s) 609, 702
EaeI YGGCCR 1 cut(s) 63
EagI CGGCCG 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Ecl136II GAGCTC 2 cut(s) 74, 204
EclXI CGGCCG 1 cut(s) 63
Eco24I GRGCYC 2 cut(s) 76, 206
Eco47I GGWCC 1 cut(s) 319
Eco47III AGCGCT 1 cut(s) 345
Eco52I CGGCCG 1 cut(s) 63
Eco53kI GAGCTC 2 cut(s) 74, 204
Eco88I CYCGRG 1 cut(s) 162
EcoICRI GAGCTC 2 cut(s) 74, 204
EcoRII CCWGG 1 cut(s) 630
EcoT22I ATGCAT 2 cut(s) 512, 690
EcoT38I GRGCYC 2 cut(s) 76, 206
FaeI CATG 4 cut(s) 510, 514, 679, 692
FaqI GGGAC 1 cut(s) 296
FatI CATG 4 cut(s) 506, 510, 675, 688
FbaI TGATCA 1 cut(s) 480
Fnu4HI GCNGC 3 cut(s) 299, 302, 426
FriOI GRGCYC 2 cut(s) 76, 206
Fsp4HI GCNGC 3 cut(s) 299, 302, 426
FspBI CTAG 1 cut(s) 6
GlaI GCGC 5 cut(s) 109, 345, 367, 376, 697
GluI GCNGC 3 cut(s) 299, 302, 426
GsuI CTGGAG 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 2 cut(s) 65, 127
HapII CCGG 5 cut(s) 62, 163, 207, 322, 754
HhaI GCGC 5 cut(s) 110, 346, 368, 377, 698
Hin1I GRCGYC 1 cut(s) 221
Hin1II CATG 4 cut(s) 510, 514, 679, 692
Hin6I GCGC 5 cut(s) 108, 344, 366, 375, 696
HinP1I GCGC 5 cut(s) 108, 344, 366, 375, 696
HincII GTYRAC 3 cut(s) 159, 258, 453
HindII GTYRAC 3 cut(s) 159, 258, 453
HinfI GANTC 1 cut(s) 454
HpaI GTTAAC 1 cut(s) 159
HpaII CCGG 5 cut(s) 62, 163, 207, 322, 754
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 3 cut(s) 159, 258, 453
Hpy188I TCNGA 3 cut(s) 193, 723, 863
Hpy188III TCNNGA 6 cut(s) 199, 458, 472, 620, 710, 823
Hpy8I GTNNAC 3 cut(s) 159, 258, 453
Hpy99I CGWCG 3 cut(s) 223, 226, 229
HpyAV CCTTC 2 cut(s) 269, 425
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 9 cut(s) 95, 301, 331, 355, 428, 510, 592, 601, 688
HpyF10VI GCNNNNNNNGC 9 cut(s) 67, 71, 101, 250, 343, 352, 372, 374, 598
HpyF3I CTNAG 5 cut(s) 447, 456, 530, 555, 618
HpySE526I ACGT 1 cut(s) 221
Hsp92I GRCGYC 1 cut(s) 221
Hsp92II CATG 4 cut(s) 510, 514, 679, 692
HspAI GCGC 5 cut(s) 108, 344, 366, 375, 696
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 480
KspAI GTTAAC 1 cut(s) 159
Kzo9I GATC 5 cut(s) 38, 215, 289, 480, 712
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 5 cut(s) 140, 201, 209, 634, 850
Lsp1109I GCAGC 3 cut(s) 285, 313, 412
LweI GCATC 3 cut(s) 152, 412, 675
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 760
MalI GATC 5 cut(s) 40, 217, 291, 482, 714
MbiI CCGCTC 1 cut(s) 253
MboI GATC 5 cut(s) 38, 215, 289, 480, 712
MboII GAAGA 2 cut(s) 260, 529
MflI RGATCY 2 cut(s) 38, 289
MhlI GDGCHC 2 cut(s) 76, 206
MluCI AATT 5 cut(s) 14, 610, 653, 724, 782
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 3 cut(s) 66, 781, 828
Mph1103I ATGCAT 2 cut(s) 512, 690
MroNI GCCGGC 1 cut(s) 61
MseI TTAA 4 cut(s) 158, 608, 656, 701
MspI CCGG 5 cut(s) 62, 163, 207, 322, 754
MspR9I CCNGG 5 cut(s) 163, 164, 323, 632, 755
Mva1269I GAATGC 2 cut(s) 415, 578
MvaI CCWGG 1 cut(s) 632
MvnI CGCG 3 cut(s) 108, 368, 375
MwoI GCNNNNNNNGC 9 cut(s) 67, 71, 101, 250, 343, 352, 372, 374, 598
NaeI GCCGGC 1 cut(s) 63
NciI CCSGG 4 cut(s) 163, 164, 323, 755
NdeII GATC 5 cut(s) 38, 215, 289, 480, 712
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 4 cut(s) 510, 514, 679, 692
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 760
NsiI ATGCAT 2 cut(s) 512, 690
NspI RCATGY 1 cut(s) 514
NspV TTCGAA 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 243
PctI GAATGC 2 cut(s) 415, 578
PdiI GCCGGC 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 223
PkrI GCNGC 3 cut(s) 300, 303, 427
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PshBI ATTAAT 1 cut(s) 656
Psp124BI GAGCTC 2 cut(s) 76, 206
Psp6I CCWGG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 126, 319
PstI CTGCAG 3 cut(s) 303, 430, 594
PsuI RGATCY 2 cut(s) 38, 289
PsyI GACNNNGTC 1 cut(s) 223
RsaI GTAC 2 cut(s) 650, 731
RsaNI GTAC 2 cut(s) 649, 730
SacI GAGCTC 2 cut(s) 76, 206
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 4 cut(s) 158, 608, 656, 701
SatI GCNGC 3 cut(s) 299, 302, 426
Sau3AI GATC 5 cut(s) 38, 215, 289, 480, 712
Sau96I GGNCC 2 cut(s) 126, 319
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 5 cut(s) 163, 164, 323, 632, 755
SduI GDGCHC 2 cut(s) 76, 206
SfaNI GCATC 3 cut(s) 152, 412, 675
SfcI CTRYAG 3 cut(s) 299, 426, 590
SfuI TTCGAA 1 cut(s) 416
SinI GGWCC 1 cut(s) 319
SmaI CCCGGG 1 cut(s) 164
Sse9I AATT 5 cut(s) 14, 610, 653, 724, 782
SsiI CCGC 1 cut(s) 253
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 2 cut(s) 76, 206
StyD4I CCNGG 5 cut(s) 161, 162, 321, 630, 753
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 224
TaqI TCGA 4 cut(s) 30, 218, 273, 416
TasI AATT 5 cut(s) 14, 610, 653, 724, 782
TatI WGTACW 2 cut(s) 648, 729
Tru1I TTAA 4 cut(s) 158, 608, 656, 701
Tru9I TTAA 4 cut(s) 158, 608, 656, 701
TscAI CASTG 3 cut(s) 182, 338, 765
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 3 cut(s) 298, 301, 425
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 4 cut(s) 422, 529, 603, 821
TspGWI ACGGA 3 cut(s) 60, 167, 300
TspMI CCCGGG 1 cut(s) 162
TspRI CASTG 3 cut(s) 182, 338, 765
Tth111I GACNNNGTC 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 319
VspI ATTAAT 1 cut(s) 656
XapI RAATTY 3 cut(s) 14, 610, 724
XceI RCATGY 1 cut(s) 514
XmaI CCCGGG 1 cut(s) 162
XspI CTAG 1 cut(s) 6
ZraI GACGTC 1 cut(s) 222
Zsp2I ATGCAT 2 cut(s) 512, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.