Rroxscaffold_5G00379700

Belongs to the glycosyltransferase 31 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
59996539 .. 59999987
3449 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00379700.1

Sequence Viewer

Length: 348 bp
ATGTTGTTGGCAATAGTGAAGGATACCCATGTGGAGGCACCCGAAGAGTTCTCAAAGAAGGCTACACCGTTCTTTGCTCATGTTGCTGATAAGTTTTATGCCAAAGTCAATGATGATGTTTATTTAAATATTGATGTTCTGGGAGCTGCACTTGCAACTCATTTAGAAAAGCCTTGCATTTATATTGGGTGCATGCAGTCGGGCGAAGTTTTCTCTGAGCTGTATGGAAGCAATTGGAGGACATTTTCCTTCAAATGGGGTTTGGAGAGATGCCCACTAATAACTATGTCGAGAGCAGGTAGGTCTATCTGGTCTTTTAGCCAGCATCTCTTGTTCTATGAAATTTGA

Protein Analysis

115

Amino Acids

13.16

Weight (kDa)

6.04

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 37
AcsI RAATTY 1 cut(s) 342
AfiI CCNNNNNNNGG 2 cut(s) 34, 255
AgsI TTSAA 1 cut(s) 253
AluBI AGCT 2 cut(s) 146, 220
AluI AGCT 2 cut(s) 146, 220
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 342
BaeI ACNNNNGTAYC 2 cut(s) 15, 48
BanI GGYRCC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 133
BciVI GTATCC 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 287
BfuI GTATCC 1 cut(s) 16
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 39
BmsI GCATC 2 cut(s) 260, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 255
BseLI CCNNNNNNNGG 2 cut(s) 34, 255
BseMII CTCAG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 133
BsgI GTGCAG 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 34, 255
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 39
BspMI ACCTGC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 69
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 194, 323
BstDEI CTNAG 1 cut(s) 216
BstMWI GCNNNNNNNGC 2 cut(s) 83, 152
BstNSI RCATGY 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 133
BsuI GTATCC 1 cut(s) 16
BveI ACCTGC 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 194, 323
CviAII CATG 3 cut(s) 29, 80, 193
CviJI RGCY 5 cut(s) 62, 146, 172, 220, 321
CviKI_1 RGCY 5 cut(s) 62, 146, 172, 220, 321
DdeI CTNAG 1 cut(s) 216
DraI TTTAAA 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
FaeI CATG 3 cut(s) 32, 83, 196
FaiI YATR 8 cut(s) 30, 81, 99, 183, 194, 225, 287, 339
FatI CATG 3 cut(s) 28, 79, 192
Fnu4HI GCNGC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
Hin1II CATG 3 cut(s) 32, 83, 196
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 291
HpyAV CCTTC 3 cut(s) 13, 52, 259
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 5 cut(s) 149, 155, 177, 192, 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 152
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 3 cut(s) 32, 83, 196
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 4 cut(s) 125, 282, 295, 335
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 2 cut(s) 260, 334
MboII GAAGA 1 cut(s) 56
MfeI CAATTG 1 cut(s) 232
MluCI AATT 2 cut(s) 232, 342
MnlI CCTC 2 cut(s) 28, 231
MseI TTAA 1 cut(s) 125
MunI CAATTG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 83, 152
NlaIII CATG 3 cut(s) 32, 83, 196
NlaIV GGNNCC 1 cut(s) 39
NspI RCATGY 1 cut(s) 196
PaeI GCATGC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 1 cut(s) 147
SetI ASST 4 cut(s) 148, 222, 301, 305
SfaNI GCATC 2 cut(s) 260, 334
SmiI ATTTAAAT 1 cut(s) 126
SphI GCATGC 1 cut(s) 196
Sse9I AATT 2 cut(s) 232, 342
SspI AATATT 1 cut(s) 130
SwaI ATTTAAAT 1 cut(s) 126
TaaI ACNGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 290
TasI AATT 2 cut(s) 232, 342
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseI GCWGC 1 cut(s) 146
XapI RAATTY 1 cut(s) 342
XceI RCATGY 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.