Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007823

Physical Location & Seq

Genomic Coordinates Forward (+)

2221795 .. 2222603

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07165.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTTGGACATAGCGTTTGAATTGATCGGAGATGCCACGTCGAATTCGCTTCTCATGTTCTGTTTCTGCAACCTCATTATTGTCATGATCTTTACCGGATCATTAAAACCTGGTTTGAAGGATTCACAAGATTCCACATTTGTTACCTCAGTGAGCTACGATATGGGCAATATTTCTTCTGATGATCATTATTGTGGTGATGATGATGAAAATATGAAAATCGCTGCTGCTATTCCATCTTCACAAGATGACCCTTTGATCGATGACTCGAGTTCTGACGAAGAAGATGATTCAGAAAGCACCCATTGCTATGCTGCTGATGATGATGCTGATGATACTGATGACGATGAGGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGAGCAAAGACTCCGAGGTTGAAGAGGAGGAAGGAGACGATGATTTGAGAATGAGGGTAGAAATGTTTATAGCAAAAATTAACAATGAATGGAGGCATGAGAAGCTTAGGGCTTTGAATTTAGGAATTAATGCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2_importin

Protein Analysis

189

Amino Acids

21.11

Weight (kDa)

4.05

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07165
fragaria_vesca	FvH4_7g28161 FvH4_7g28170
prunus_persica	Prupe.2G282100_v2.0.a1 Prupe.2G282200_v2.0.a1
pyrus_communis	pycom01g19730 pycom07g23080
rosa_chinensis	RchiOBHm_Chr1g0375111 RchiOBHm_Chr1g0375121
rosa_laevigata	RLG00000026685 RLG00000026686
rosa_multiflora	Rmu_sc0000554.1_g000019 Rmu_sc0000554.1_g000020
rosa_roxburghii	Rroxscaffold_4G00283000
rosa_rugosa	Rorug01G0388600
rosa_samantha	Rh1AG399000 Rh1AG399100 Rh1BG365400 Rh1BG365500 Rh1CG378300 Rh1CG378400 Rh1DG396100 Rh1DG396200
rosa_wichuraiana	Rw1G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	43, 547
AgsI	TTSAA	4 cut(s)	20, 118, 452, 547
AjiI	CACGTC	1 cut(s)	39
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	2 cut(s)	156, 535
AluI	AGCT	2 cut(s)	156, 535
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	268
ApeKI	GCWGC	3 cut(s)	224, 227, 314
ApoI	RAATTY	2 cut(s)	43, 547
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AseI	ATTAAT	1 cut(s)	558
AsuHPI	GGTGA	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	211, 214, 301
BccI	CCATC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	459
BisI	GCNGC	3 cut(s)	225, 228, 315
BlsI	GCNGC	3 cut(s)	226, 229, 316
Bme1390I	CCNGG	1 cut(s)	111
BmeT110I	CYCGRG	1 cut(s)	268
BmgBI	CACGTC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	22, 316
Bpu10I	CCTNAGC	1 cut(s)	536
Bsa29I	ATCGAT	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	444
BsaWI	WCCGGW	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	111
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	3 cut(s)	211, 214, 301
BshVI	ATCGAT	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	459
BsmBI	CGTCTC	1 cut(s)	459
BsoBI	CYCGRG	1 cut(s)	268
Bsp143I	GATC	5 cut(s)	24, 87, 98, 184, 258
BspCNI	CTCAG	1 cut(s)	161
BspDI	ATCGAT	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	84
BspPI	GGATC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	5 cut(s)	24, 87, 98, 184, 258
Bst2UI	CCWGG	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	148, 536
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	5 cut(s)	27, 90, 101, 187, 261
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	5 cut(s)	24, 87, 98, 184, 258
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 532
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstV1I	GCAGC	3 cut(s)	211, 214, 301
Bsu15I	ATCGAT	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	261
BtrI	CACGTC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	156
CciI	TCATGA	1 cut(s)	84
ClaI	ATCGAT	1 cut(s)	261
CsiI	ACCWGGT	1 cut(s)	109
CviAII	CATG	3 cut(s)	55, 85, 527
CviJI	RGCY	3 cut(s)	156, 535, 542
CviKI_1	RGCY	3 cut(s)	156, 535, 542
DdeI	CTNAG	2 cut(s)	148, 536
DpnI	GATC	5 cut(s)	26, 89, 100, 186, 260
DpnII	GATC	5 cut(s)	24, 87, 98, 184, 258
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	459
FaeI	CATG	3 cut(s)	58, 88, 530
FaiI	YATR	8 cut(s)	11, 56, 86, 164, 215, 312, 500, 528
FatI	CATG	3 cut(s)	54, 84, 526
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	225, 228, 315
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	3 cut(s)	225, 228, 315
GluI	GCNGC	3 cut(s)	225, 228, 315
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	3 cut(s)	58, 88, 530
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	5 cut(s)	122, 131, 266, 290, 440
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	209
Hpy188I	TCNGA	5 cut(s)	29, 181, 277, 295, 445
Hpy188III	TCNNGA	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	112, 455
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 532
HpyF3I	CTNAG	2 cut(s)	148, 536
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	3 cut(s)	58, 88, 530
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	24, 87, 98, 184, 258
LpnPI	CCDG	3 cut(s)	96, 109, 123
Lsp1109I	GCAGC	3 cut(s)	211, 214, 301
LweI	GCATC	2 cut(s)	22, 316
MabI	ACCWGGT	1 cut(s)	109
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	5 cut(s)	26, 89, 100, 186, 260
MboI	GATC	5 cut(s)	24, 87, 98, 184, 258
MboII	GAAGA	5 cut(s)	168, 231, 293, 296, 464
MluCI	AATT	5 cut(s)	20, 43, 507, 547, 555
MlyI	GAGTC	2 cut(s)	260, 434
MnlI	CCTC	8 cut(s)	83, 157, 343, 439, 448, 451, 477, 516
MseI	TTAA	3 cut(s)	104, 510, 558
MslI	CAYNNNNRTG	2 cut(s)	192, 309
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	306, 532
NdeII	GATC	5 cut(s)	24, 87, 98, 184, 258
NlaIII	CATG	3 cut(s)	58, 88, 530
PaeR7I	CTCGAG	1 cut(s)	268
PagI	TCATGA	1 cut(s)	84
PfeI	GAWTC	3 cut(s)	122, 131, 290
PkrI	GCNGC	3 cut(s)	226, 229, 316
PleI	GAGTC	2 cut(s)	260, 434
PpsI	GAGTC	2 cut(s)	260, 434
PshBI	ATTAAT	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspXI	VCTCGAGB	1 cut(s)	268
RseI	CAYNNNNRTG	2 cut(s)	192, 309
SaqAI	TTAA	3 cut(s)	104, 510, 558
SatI	GCNGC	3 cut(s)	225, 228, 315
Sau3AI	GATC	5 cut(s)	24, 87, 98, 184, 258
SchI	GAGTC	2 cut(s)	260, 434
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	7 cut(s)	41, 75, 112, 149, 158, 450, 537
SexAI	ACCWGGT	1 cut(s)	109
SfaNI	GCATC	2 cut(s)	22, 316
Sfr274I	CTCGAG	1 cut(s)	268
SlaI	CTCGAG	1 cut(s)	268
SmiMI	CAYNNNNRTG	2 cut(s)	192, 309
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
Sse9I	AATT	5 cut(s)	20, 43, 507, 547, 555
SspI	AATATT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	109
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	3 cut(s)	41, 261, 269
TasI	AATT	5 cut(s)	20, 43, 507, 547, 555
TfiI	GAWTC	3 cut(s)	122, 131, 290
Tru1I	TTAA	3 cut(s)	104, 510, 558
Tru9I	TTAA	3 cut(s)	104, 510, 558
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	3 cut(s)	224, 227, 314
TspDTI	ATGAA	3 cut(s)	222, 230, 531
TspRI	CASTG	1 cut(s)	156
VspI	ATTAAT	1 cut(s)	558
XapI	RAATTY	2 cut(s)	43, 547
XhoI	CTCGAG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.