Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007823

Physical Location & Seq

Genomic Coordinates Forward (+)

24142769 .. 24143119

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGATCCTCGTTGGTTCGAAACCCTGCTCTTACGTTGATCAAGAAAGTGTCTCAACGGTCACCAGCAGCTGCAAAACCAGATTCTCAAATGATCATAAACAAGCTGAAGATGATAAATGTGAGCAGGAGGGTATTATGATCAAATCACCAATTGTTTTTGGCCAAGTGGCGAATCCCGAGGAAGAACTTGCCACTGCCGGAGAAGACAATGGCAGCGGCGATCATCACAATGAAAGCAAGGAGTGTGACAATGAAGATGAGCTGAGAAGAAGAGTGGAGGAATTCATTGAAAAAGTTAACAGAGGATGGAAGGCAGAGTTGTTGAGAACCTCACATTTAAATTTAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

13.07

Weight (kDa)

4.8

Isoelectric Point (pI)

61.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07165
fragaria_vesca	FvH4_7g28161 FvH4_7g28170
prunus_persica	Prupe.2G282100_v2.0.a1 Prupe.2G282200_v2.0.a1
pyrus_communis	pycom01g19730 pycom07g23080
rosa_chinensis	RchiOBHm_Chr1g0375111 RchiOBHm_Chr1g0375121
rosa_laevigata	RLG00000026685 RLG00000026686
rosa_multiflora	Rmu_sc0000554.1_g000019 Rmu_sc0000554.1_g000020
rosa_roxburghii	Rroxscaffold_4G00283000
rosa_rugosa	Rorug01G0388600
rosa_samantha	Rh1AG399000 Rh1AG399100 Rh1BG365400 Rh1BG365500 Rh1CG378300 Rh1CG378400 Rh1DG396100 Rh1DG396200
rosa_wichuraiana	Rw1G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	281, 340
AcuI	CTGAAG	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	290
AluBI	AGCT	3 cut(s)	69, 104, 262
AluI	AGCT	3 cut(s)	69, 104, 262
Alw26I	GTCTC	1 cut(s)	55
AlwNI	CAGNNNCTG	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	3 cut(s)	66, 69, 213
ApoI	RAATTY	2 cut(s)	281, 340
AsuHPI	GGTGA	2 cut(s)	52, 138
AsuII	TTCGAA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	56, 78, 225
BccI	CCATC	1 cut(s)	300
BclI	TGATCA	3 cut(s)	37, 91, 138
BcoDI	GTCTC	1 cut(s)	55
BisI	GCNGC	4 cut(s)	67, 70, 214, 217
BlsI	GCNGC	4 cut(s)	68, 71, 215, 218
BmeT110I	CYCGRG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	311
BseMII	CTCAG	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	56, 78, 225
BshFI	GGCC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	17
Bsp143I	GATC	5 cut(s)	3, 37, 91, 138, 220
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	255
BspT104I	TTCGAA	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	5 cut(s)	3, 37, 91, 138, 220
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	265
BstBI	TTCGAA	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	263
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	5 cut(s)	6, 40, 94, 141, 223
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	5 cut(s)	3, 37, 91, 138, 220
BstPI	GGTNACC	1 cut(s)	58
BstV1I	GCAGC	3 cut(s)	56, 78, 225
BstV2I	GAAGAC	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	311
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	69
CviJI	RGCY	4 cut(s)	69, 104, 162, 262
CviKI_1	RGCY	4 cut(s)	69, 104, 162, 262
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	5 cut(s)	5, 39, 93, 140, 222
DpnII	GATC	5 cut(s)	3, 37, 91, 138, 220
DraI	TTTAAA	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	176
Eco91I	GGTNACC	1 cut(s)	58
EcoO65I	GGTNACC	1 cut(s)	58
EcoRI	GAATTC	1 cut(s)	281
FaiI	YATR	2 cut(s)	96, 137
FbaI	TGATCA	3 cut(s)	37, 91, 138
Fnu4HI	GCNGC	4 cut(s)	67, 70, 214, 217
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	4 cut(s)	67, 70, 214, 217
GluI	GCNGC	4 cut(s)	67, 70, 214, 217
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	2 cut(s)	81, 172
HpaI	GTTAAC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	2 cut(s)	52, 138
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188III	TCNNGA	2 cut(s)	41, 176
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	72
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	33
Ksp22I	TGATCA	3 cut(s)	37, 91, 138
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	5 cut(s)	3, 37, 91, 138, 220
LpnPI	CCDG	5 cut(s)	37, 76, 91, 110, 211
Lsp1109I	GCAGC	3 cut(s)	56, 78, 225
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	58, 245
MalI	GATC	5 cut(s)	5, 39, 93, 140, 222
MboI	GATC	5 cut(s)	3, 37, 91, 138, 220
MboII	GAAGA	6 cut(s)	119, 194, 215, 266, 279, 282
MfeI	CAATTG	1 cut(s)	150
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	3 cut(s)	150, 281, 340
MluNI	TGGCCA	1 cut(s)	162
MnlI	CCTC	6 cut(s)	17, 121, 172, 271, 296, 340
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	3 cut(s)	297, 338, 344
MslI	CAYNNNNRTG	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	162
MspA1I	CMGCKG	2 cut(s)	69, 216
MspI	CCGG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	150
NdeII	GATC	5 cut(s)	3, 37, 91, 138, 220
NmuCI	GTSAC	2 cut(s)	58, 245
NspV	TTCGAA	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	81, 172
PkrI	GCNGC	4 cut(s)	68, 71, 215, 218
PspEI	GGTNACC	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	297, 338, 344
SatI	GCNGC	4 cut(s)	67, 70, 214, 217
Sau3AI	GATC	5 cut(s)	3, 37, 91, 138, 220
SetI	ASST	5 cut(s)	36, 71, 106, 264, 332
SfuI	TTCGAA	1 cut(s)	17
SmiI	ATTTAAAT	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	3 cut(s)	150, 281, 340
SsiI	CCGC	1 cut(s)	216
SwaI	ATTTAAAT	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	17
TasI	AATT	3 cut(s)	150, 281, 340
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	81, 172
Tru1I	TTAA	3 cut(s)	297, 338, 344
Tru9I	TTAA	3 cut(s)	297, 338, 344
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	2 cut(s)	58, 245
TseI	GCWGC	3 cut(s)	66, 69, 213
Tsp45I	GTSAC	2 cut(s)	58, 245
TspDTI	ATGAA	3 cut(s)	246, 267, 274
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	2 cut(s)	281, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.