Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007823

Physical Location & Seq

Genomic Coordinates Forward (+)

20918698 .. 20919614

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28161.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTGGTTTCAACACTGGACTTGCTCACGCAGGCTGCTTCAAATTCTCTTTATGTTTTTTGTTTCTGCAACTTGATCATAGTCATGATCGTCGTTGGCTCCAAACCCGGGTCTTACTTTGATCAAGAAAGTGAACTTCCTCTCTCAAAGGTCACCTGCACAACTACAAATGATAAACAAGTCCATCATGATGCTAAATGTGAGGGTACCATCAGTTCATCAGTTGTTGTCAGAAATGAAGTTTCAAATGTCAAGACAGAACTAGCAAGCAATGAAAAAGAGGTCAGTGCTGATCAGATTGTTGACAGTAAGGAGTGTGACATTGATGATGAGCTGAGAAGAAGAGCCGAAGAATTCATCGAAAAAGTTAACAGCGAATGGAGGGCTGAATTGCTGAGAACCTCACATTTAATCAAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.65

Weight (kDa)

4.86

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07165
fragaria_vesca	FvH4_7g28161 FvH4_7g28170
prunus_persica	Prupe.2G282100_v2.0.a1 Prupe.2G282200_v2.0.a1
pyrus_communis	pycom01g19730 pycom07g23080
rosa_chinensis	RchiOBHm_Chr1g0375111 RchiOBHm_Chr1g0375121
rosa_laevigata	RLG00000026685 RLG00000026686
rosa_multiflora	Rmu_sc0000554.1_g000019 Rmu_sc0000554.1_g000020
rosa_roxburghii	Rroxscaffold_4G00283000
rosa_rugosa	Rorug01G0388600
rosa_samantha	Rh1AG399000 Rh1AG399100 Rh1BG365400 Rh1BG365500 Rh1CG378300 Rh1CG378400 Rh1DG396100 Rh1DG396200
rosa_wichuraiana	Rw1G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	164
Acc65I	GGTACC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	206
AcsI	RAATTY	2 cut(s)	43, 353
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	12, 42, 246
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	2 cut(s)	43, 353
Asp718I	GGTACC	1 cut(s)	206
AsuC2I	CCSGG	2 cut(s)	108, 109
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	2 cut(s)	192, 218
BclI	TGATCA	3 cut(s)	75, 121, 292
BcnI	CCSGG	2 cut(s)	108, 109
BfaI	CTAG	1 cut(s)	263
BfuAI	ACCTGC	1 cut(s)	164
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	2 cut(s)	108, 109
BmeT110I	CYCGRG	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	100, 208
BmrFI	CCNGG	2 cut(s)	108, 109
BmsI	GCATC	1 cut(s)	181
BpuMI	CCSGG	2 cut(s)	108, 109
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	326, 386
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	419
BshNI	GGYRCC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	108
BsnI	GGCC	1 cut(s)	419
BsoBI	CYCGRG	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	75, 87, 121, 292
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	2 cut(s)	327, 387
BspHI	TCATGA	2 cut(s)	84, 187
BspLI	GGNNCC	2 cut(s)	100, 208
BspMI	ACCTGC	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	4 cut(s)	75, 87, 121, 292
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	337
BstC8I	GCNNGC	2 cut(s)	33, 268
BstDEI	CTNAG	2 cut(s)	335, 395
BstEII	GGTNACC	1 cut(s)	151
BstKTI	GATC	4 cut(s)	78, 90, 124, 295
BstMBI	GATC	4 cut(s)	75, 87, 121, 292
BstPI	GGTNACC	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	106, 107
BstV1I	GCAGC	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	14, 292
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	2 cut(s)	33, 268
CciI	TCATGA	2 cut(s)	84, 187
Cfr9I	CCCGGG	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	2 cut(s)	85, 188
CviJI	RGCY	6 cut(s)	35, 99, 334, 347, 386, 419
CviKI_1	RGCY	6 cut(s)	35, 99, 334, 347, 386, 419
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	2 cut(s)	335, 395
DpnI	GATC	4 cut(s)	77, 89, 123, 294
DpnII	GATC	4 cut(s)	75, 87, 121, 292
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Eco147I	AGGCCT	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	107
Eco91I	GGTNACC	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	353
FaeI	CATG	2 cut(s)	88, 191
FaiI	YATR	4 cut(s)	54, 80, 86, 189
FatI	CATG	2 cut(s)	84, 187
FbaI	TGATCA	3 cut(s)	75, 121, 292
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	2 cut(s)	88, 191
HincII	GTYRAC	2 cut(s)	304, 370
HindII	GTYRAC	2 cut(s)	304, 370
HpaI	GTTAAC	1 cut(s)	370
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	3 cut(s)	134, 304, 370
Hpy188I	TCNGA	2 cut(s)	233, 297
Hpy188III	TCNNGA	4 cut(s)	85, 125, 188, 253
Hpy8I	GTNNAC	3 cut(s)	134, 304, 370
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4V	TGCA	2 cut(s)	69, 159
HpyF3I	CTNAG	2 cut(s)	335, 395
Hsp92II	CATG	2 cut(s)	88, 191
KpnI	GGTACC	1 cut(s)	210
Ksp22I	TGATCA	3 cut(s)	75, 121, 292
KspAI	GTTAAC	1 cut(s)	370
Kzo9I	GATC	4 cut(s)	75, 87, 121, 292
LguI	GCTCTTC	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	4 cut(s)	2, 17, 121, 169
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	151, 317
MalI	GATC	4 cut(s)	77, 89, 123, 294
MboI	GATC	4 cut(s)	75, 87, 121, 292
MboII	GAAGA	3 cut(s)	351, 354, 362
MluCI	AATT	3 cut(s)	43, 353, 389
MnlI	CCTC	5 cut(s)	150, 196, 274, 375, 412
MseI	TTAA	2 cut(s)	369, 410
MslI	CAYNNNNRTG	2 cut(s)	83, 189
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	108, 109
NciI	CCSGG	2 cut(s)	108, 109
NdeII	GATC	4 cut(s)	75, 87, 121, 292
NlaIII	CATG	2 cut(s)	88, 191
NlaIV	GGNNCC	2 cut(s)	100, 208
NmuCI	GTSAC	2 cut(s)	151, 317
PagI	TCATGA	2 cut(s)	84, 187
PaqCI	CACCTGC	1 cut(s)	164
PceI	AGGCCT	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	37
PspEI	GGTNACC	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	100, 208
PsrI	GAACNNNNNNTAC	2 cut(s)	199, 231
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
RseI	CAYNNNNRTG	2 cut(s)	83, 189
SapI	GCTCTTC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	369, 410
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	4 cut(s)	75, 87, 121, 292
ScrFI	CCNGG	2 cut(s)	108, 109
SetI	ASST	5 cut(s)	153, 158, 285, 336, 404
SfaNI	GCATC	1 cut(s)	181
SmaI	CCCGGG	1 cut(s)	109
SmiMI	CAYNNNNRTG	2 cut(s)	83, 189
Sse9I	AATT	3 cut(s)	43, 353, 389
SseBI	AGGCCT	1 cut(s)	419
SspMI	CTAG	1 cut(s)	263
StuI	AGGCCT	1 cut(s)	419
StyD4I	CCNGG	2 cut(s)	106, 107
TaaI	ACNGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	360
TasI	AATT	3 cut(s)	43, 353, 389
Tru1I	TTAA	2 cut(s)	369, 410
Tru9I	TTAA	2 cut(s)	369, 410
TscAI	CASTG	2 cut(s)	21, 292
TseFI	GTSAC	2 cut(s)	151, 317
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	151, 317
TspDTI	ATGAA	4 cut(s)	207, 252, 288, 346
TspMI	CCCGGG	1 cut(s)	107
TspRI	CASTG	2 cut(s)	21, 292
XapI	RAATTY	2 cut(s)	43, 353
XmaI	CCCGGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.