Prupe.2G282200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0007823
Physical Location & Seq
Forward (+)
28056791 .. 28057481
691 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G282200.1

Sequence Viewer

Length: 420 bp
ATGTACACAACTATGCTTGATTCTACACTAGATTTAATCACTCAGGCTGCTTCCAACTCTCTATTCATCTTCTGTTTCTGCAACTTGATCATAGTCATTATCCTCGTGGGCTCGAAACCCATCTCCAACAATGATGAAAGAAGCGCAATTCACCTCACAATGCCCGCCAGCAAGCACGTGGATGATGAACAAGGCACAAGGGCTAAACAAGTGTGCAAGAAGAACAATGCCTTGATGGAAGTCAGTCAAGTGTCAAATGCCCAGACTGCAATATCTGATAACAGTAAAGTCAGCAGTGCCAATAGTGACAATGGTGAAACTGAGGGTGATGACGAGCTGAGGACAAGAGCAGAAGAATTTATAGAAAAGGTTAATAAAGCATGGAAAGCAGAATTACTAAGAAATTCACGTTTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.41

Weight (kDa)

5.17

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 165
AcsI RAATTY 2 cut(s) 356, 403
AcvI CACGTG 1 cut(s) 178
AfaI GTAC 1 cut(s) 5
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 1 cut(s) 337
AluI AGCT 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 2 cut(s) 356, 403
AspLEI GCGC 1 cut(s) 146
AsuHPI GGTGA 3 cut(s) 143, 326, 338
BanII GRGCYC 1 cut(s) 113
BauI CACGAG 1 cut(s) 104
BbrPI CACGTG 1 cut(s) 178
BbvCI CCTCAGC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 34
BccI CCATC 2 cut(s) 128, 229
BclI TGATCA 1 cut(s) 87
BfaI CTAG 2 cut(s) 29, 418
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 338
BsaAI YACGTR 1 cut(s) 178
BseGI GGATG 1 cut(s) 187
BseMII CTCAG 3 cut(s) 56, 312, 329
BseXI GCAGC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 113
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 1 cut(s) 165
BspCNI CTCAG 3 cut(s) 55, 313, 330
BsrGI TGTACA 1 cut(s) 3
BssMI GATC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 104
Bst2BI CACGAG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 284
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 3 cut(s) 165, 169, 173
BstDEI CTNAG 4 cut(s) 42, 321, 338, 398
BstF5I GGATG 1 cut(s) 187
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 266, 386
BstV1I GCAGC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 187
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 3 cut(s) 165, 169, 173
CfoI GCGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 381
CviJI RGCY 4 cut(s) 47, 111, 203, 337
CviKI_1 RGCY 4 cut(s) 47, 111, 203, 337
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 4 cut(s) 42, 321, 338, 398
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 113
Eco72I CACGTG 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 113
FaeI CATG 1 cut(s) 384
FaiI YATR 4 cut(s) 14, 92, 362, 382
FatI CATG 1 cut(s) 380
FauI CCCGC 1 cut(s) 172
FbaI TGATCA 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 29, 418
GlaI GCGC 1 cut(s) 145
GluI GCNGC 1 cut(s) 48
HhaI GCGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 384
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 1 cut(s) 20
HphI GGTGA 3 cut(s) 143, 326, 338
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 277
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 2 cut(s) 177, 409
HpyCH4V TGCA 3 cut(s) 81, 216, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 386
HpyF3I CTNAG 4 cut(s) 42, 321, 338, 398
HpySE526I ACGT 2 cut(s) 177, 409
Hsp92II CATG 1 cut(s) 384
HspAI GCGC 1 cut(s) 144
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 1 cut(s) 87
LpnPI CCDG 3 cut(s) 29, 181, 275
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 2 cut(s) 29, 418
MaeII ACGT 2 cut(s) 177, 409
MaeIII GTNAC 1 cut(s) 305
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 3 cut(s) 61, 232, 365
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 4 cut(s) 147, 356, 392, 403
MmeI TCCRAC 2 cut(s) 78, 150
MnlI CCTC 4 cut(s) 113, 164, 316, 333
MseI TTAA 2 cut(s) 35, 372
MslI CAYNNNNRTG 2 cut(s) 11, 180
MwoI GCNNNNNNNGC 2 cut(s) 266, 386
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 49
PmaCI CACGTG 1 cut(s) 178
PmlI CACGTG 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 178
PspCI CACGTG 1 cut(s) 178
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 11, 180
SaqAI TTAA 2 cut(s) 35, 372
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 87
SduI GDGCHC 1 cut(s) 113
SetI ASST 5 cut(s) 156, 180, 339, 372, 412
SmiMI CAYNNNNRTG 2 cut(s) 11, 180
Sse9I AATT 4 cut(s) 147, 356, 392, 403
SsiI CCGC 1 cut(s) 165
SspMI CTAG 2 cut(s) 29, 418
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 2 cut(s) 180, 412
TaqI TCGA 1 cut(s) 113
TasI AATT 4 cut(s) 147, 356, 392, 403
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 35, 372
Tru9I TTAA 2 cut(s) 35, 372
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 3 cut(s) 55, 150, 201
TspRI CASTG 1 cut(s) 301
XapI RAATTY 2 cut(s) 356, 403
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XspI CTAG 2 cut(s) 29, 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.