Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007823

Physical Location & Seq

Genomic Coordinates Reverse (-)

5033680 .. 5035033

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTGGTTTCTACACTGGACATGCTCACTCAGGCTGCTTCGAATTCTCTCTACGTTTTCTGCTTCTGCAATTTGATCATAGTCATGATCGTAGTGGGCTCCAAACCTGGGTCTTACTTTGATCAGGAAAGTGAACTTCCTCGCTCAAAGGCTGCTTCGAATTCTCTCTACGTTTTCTGCTTCTGCAATTTGATCATAGTCATGATCGTAGTGGGCTCCAAACCTGGGTCTTACTTTGATCAGGAAAGTGAACTTCCTCGCTCAAAGGTGCCCTACACTATTACAAATGATAAACAAGTTGATCATGATGCTAATTGTGAGCAGATGGGTATCACCAGTTCATCAGTTGTTACCAGTAGTGAAGCAAATGCCAAGAAAGAACTAGCAAGCGATGAAAAAGCCGGCATTGATGAGCAGATTGTTGTCAGTAATGAGTGTGACAATGACGATGAGCTGAGAAGAAAAGCCGAAGAATTTATCGAAAAAGTTAACAGGGGATGGAAGGCAGAATTGCTGAGAAACTCACATTTAATCAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.0

Weight (kDa)

4.82

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07165
fragaria_vesca	FvH4_7g28161 FvH4_7g28170
prunus_persica	Prupe.2G282100_v2.0.a1 Prupe.2G282200_v2.0.a1
pyrus_communis	pycom01g19730 pycom07g23080
rosa_chinensis	RchiOBHm_Chr1g0375111 RchiOBHm_Chr1g0375121
rosa_laevigata	RLG00000026685 RLG00000026686
rosa_multiflora	Rmu_sc0000554.1_g000019 Rmu_sc0000554.1_g000020
rosa_roxburghii	Rroxscaffold_4G00283000
rosa_rugosa	Rorug01G0388600
rosa_samantha	Rh1AG399000 Rh1AG399100 Rh1BG365400 Rh1BG365500 Rh1CG378300 Rh1CG378400 Rh1DG396100 Rh1DG396200
rosa_wichuraiana	Rw1G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AcsI	RAATTY	3 cut(s)	43, 160, 473
AfiI	CCNNNNNNNGG	2 cut(s)	108, 225
AjnI	CCWGG	2 cut(s)	106, 223
AluBI	AGCT	1 cut(s)	454
AluI	AGCT	1 cut(s)	454
ApeKI	GCWGC	2 cut(s)	35, 152
ApoI	RAATTY	3 cut(s)	43, 160, 473
AsuHPI	GGTGA	1 cut(s)	325
AsuII	TTCGAA	2 cut(s)	41, 158
BaeGI	GKGCMC	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	2 cut(s)	101, 218
BbvI	GCAGC	2 cut(s)	22, 139
BccI	CCATC	2 cut(s)	319, 492
BciT130I	CCWGG	2 cut(s)	108, 225
BclI	TGATCA	5 cut(s)	75, 121, 192, 238, 301
BfaI	CTAG	1 cut(s)	383
BisI	GCNGC	2 cut(s)	36, 153
BlsI	GCNGC	2 cut(s)	37, 154
Bme1390I	CCNGG	2 cut(s)	108, 225
BmiI	GGNNCC	3 cut(s)	100, 217, 270
BmrFI	CCNGG	2 cut(s)	108, 225
BmsI	GCATC	1 cut(s)	298
Bpu14I	TTCGAA	2 cut(s)	41, 158
BsaBI	GATNNNNATC	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	107, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 225
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	3 cut(s)	21, 336, 354
Bse8I	GATNNNNATC	1 cut(s)	329
BseBI	CCWGG	2 cut(s)	108, 225
BseDI	CCNNGG	2 cut(s)	107, 224
BseGI	GGATG	1 cut(s)	503
BseJI	GATNNNNATC	1 cut(s)	329
BseLI	CCNNNNNNNGG	2 cut(s)	108, 225
BseMII	CTCAG	3 cut(s)	44, 446, 506
BseNI	ACTGG	3 cut(s)	21, 336, 354
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	22, 139
BshNI	GGYRCC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	402
BslI	CCNNNNNNNGG	2 cut(s)	108, 225
Bsp119I	TTCGAA	2 cut(s)	41, 158
Bsp1286I	GDGCHC	3 cut(s)	101, 218, 273
Bsp143I	GATC	7 cut(s)	75, 87, 121, 192, 204, 238, 301
BspCNI	CTCAG	3 cut(s)	43, 447, 507
BspHI	TCATGA	3 cut(s)	84, 201, 304
BspLI	GGNNCC	3 cut(s)	100, 217, 270
BspT104I	TTCGAA	2 cut(s)	41, 158
BspT107I	GGYRCC	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	3 cut(s)	21, 336, 354
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	107, 224
BssMI	GATC	7 cut(s)	75, 87, 121, 192, 204, 238, 301
Bst2UI	CCWGG	2 cut(s)	108, 225
BstBI	TTCGAA	2 cut(s)	41, 158
BstC8I	GCNNGC	2 cut(s)	388, 403
BstDEI	CTNAG	3 cut(s)	30, 455, 515
BstF5I	GGATG	1 cut(s)	503
BstKTI	GATC	7 cut(s)	78, 90, 124, 195, 207, 241, 304
BstMBI	GATC	7 cut(s)	75, 87, 121, 192, 204, 238, 301
BstNI	CCWGG	2 cut(s)	108, 225
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	2 cut(s)	106, 223
BstSLI	GKGCMC	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	22, 139
BtgZI	GCGATG	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	503
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	2 cut(s)	388, 403
CciI	TCATGA	3 cut(s)	84, 201, 304
Cfr10I	RCCGGY	1 cut(s)	401
CviAII	CATG	4 cut(s)	22, 85, 202, 305
CviJI	RGCY	7 cut(s)	35, 99, 152, 216, 401, 454, 467
CviKI_1	RGCY	7 cut(s)	35, 99, 152, 216, 401, 454, 467
DdeI	CTNAG	3 cut(s)	30, 455, 515
DpnI	GATC	7 cut(s)	77, 89, 123, 194, 206, 240, 303
DpnII	GATC	7 cut(s)	75, 87, 121, 192, 204, 238, 301
Eco24I	GRGCYC	2 cut(s)	101, 218
EcoRI	GAATTC	2 cut(s)	43, 160
EcoRII	CCWGG	2 cut(s)	106, 223
EcoT38I	GRGCYC	2 cut(s)	101, 218
FaeI	CATG	4 cut(s)	25, 88, 205, 308
FaiI	YATR	7 cut(s)	23, 80, 86, 197, 203, 306, 541
FatI	CATG	4 cut(s)	21, 84, 201, 304
FbaI	TGATCA	5 cut(s)	75, 121, 192, 238, 301
Fnu4HI	GCNGC	2 cut(s)	36, 153
FokI	GGATG	1 cut(s)	510
FriOI	GRGCYC	2 cut(s)	101, 218
Fsp4HI	GCNGC	2 cut(s)	36, 153
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	2 cut(s)	36, 153
HapII	CCGG	1 cut(s)	402
Hin1II	CATG	4 cut(s)	25, 88, 205, 308
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HpaI	GTTAAC	1 cut(s)	490
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	3 cut(s)	134, 251, 490
Hpy188III	TCNNGA	5 cut(s)	85, 125, 202, 242, 305
Hpy8I	GTNNAC	3 cut(s)	134, 251, 490
HpyAV	CCTTC	1 cut(s)	496
HpyCH4IV	ACGT	2 cut(s)	54, 171
HpyCH4V	TGCA	2 cut(s)	69, 186
HpyF3I	CTNAG	3 cut(s)	30, 455, 515
HpySE526I	ACGT	2 cut(s)	54, 171
Hsp92II	CATG	4 cut(s)	25, 88, 205, 308
KroI	GCCGGC	1 cut(s)	401
KroNI	GCCGGC	1 cut(s)	403
Ksp22I	TGATCA	5 cut(s)	75, 121, 192, 238, 301
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	7 cut(s)	75, 87, 121, 192, 204, 238, 301
LmnI	GCTCC	2 cut(s)	104, 221
Lsp1109I	GCAGC	2 cut(s)	22, 139
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	2 cut(s)	54, 171
MaeIII	GTNAC	2 cut(s)	349, 437
MalI	GATC	7 cut(s)	77, 89, 123, 194, 206, 240, 303
MboI	GATC	7 cut(s)	75, 87, 121, 192, 204, 238, 301
MboII	GAAGA	2 cut(s)	471, 482
MhlI	GDGCHC	3 cut(s)	101, 218, 273
MluCI	AATT	7 cut(s)	43, 70, 160, 187, 313, 473, 509
MnlI	CCTC	2 cut(s)	150, 267
MroNI	GCCGGC	1 cut(s)	401
MseI	TTAA	2 cut(s)	489, 530
MslI	CAYNNNNRTG	2 cut(s)	83, 200
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	108, 225
MvaI	CCWGG	2 cut(s)	108, 225
NaeI	GCCGGC	1 cut(s)	403
NdeII	GATC	7 cut(s)	75, 87, 121, 192, 204, 238, 301
NgoMIV	GCCGGC	1 cut(s)	401
NlaIII	CATG	4 cut(s)	25, 88, 205, 308
NlaIV	GGNNCC	3 cut(s)	100, 217, 270
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	25
NspV	TTCGAA	2 cut(s)	41, 158
PagI	TCATGA	3 cut(s)	84, 201, 304
PdiI	GCCGGC	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	37, 154
Psp6I	CCWGG	2 cut(s)	106, 223
PspGI	CCWGG	2 cut(s)	106, 223
PspN4I	GGNNCC	3 cut(s)	100, 217, 270
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
RseI	CAYNNNNRTG	2 cut(s)	83, 200
SaqAI	TTAA	2 cut(s)	489, 530
SatI	GCNGC	2 cut(s)	36, 153
Sau3AI	GATC	7 cut(s)	75, 87, 121, 192, 204, 238, 301
ScrFI	CCNGG	2 cut(s)	108, 225
SduI	GDGCHC	3 cut(s)	101, 218, 273
SetI	ASST	6 cut(s)	57, 109, 174, 226, 270, 456
SfaNI	GCATC	1 cut(s)	298
SfuI	TTCGAA	2 cut(s)	41, 158
SmiMI	CAYNNNNRTG	2 cut(s)	83, 200
Sse9I	AATT	7 cut(s)	43, 70, 160, 187, 313, 473, 509
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	2 cut(s)	106, 223
TaiI	ACGT	2 cut(s)	57, 174
TaqI	TCGA	3 cut(s)	41, 158, 480
TasI	AATT	7 cut(s)	43, 70, 160, 187, 313, 473, 509
Tru1I	TTAA	2 cut(s)	489, 530
Tru9I	TTAA	2 cut(s)	489, 530
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	2 cut(s)	35, 152
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	2 cut(s)	330, 408
TspRI	CASTG	1 cut(s)	21
XapI	RAATTY	3 cut(s)	43, 160, 473
XceI	RCATGY	1 cut(s)	25
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.